RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CDHR5Q9HBB8 845 aa18.89■□□□□ 0.61
USP48-204ENST00000400301 CNGB3Q9NQW8 809 aa18.89■□□□□ 0.61
USP48-204ENST00000400301 RCOR3Q9P2K3 495 aaPredicted RBP18.89■□□□□ 0.61
USP48-204ENST00000400301 GRIA1P42261 906 aa18.89■□□□□ 0.61
USP48-204ENST00000400301 RENBPP51606 427 aa18.89■□□□□ 0.61
USP48-204ENST00000400301 CRYBB1P53674 252 aaPredicted RBP18.89■□□□□ 0.61
USP48-204ENST00000400301 RBM15BQ8NDT2 890 aaKnown RBP18.89■□□□□ 0.61
USP48-204ENST00000400301 CDRT15Q96T59 188 aa18.89■□□□□ 0.61
USP48-204ENST00000400301 FAM95CA0A1B0GW59 222 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 SLC12A8A0AV02 714 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ARHGAP10A1A4S6 786 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 MYL4P12829 197 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 AKR1A1P14550 325 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 HDAC4P56524 1084 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 IRX1P78414 480 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 INPP5AQ14642 412 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 NFE2Q16621 373 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 NET1Q7Z628 596 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 TUBGCP3Q96CW5 907 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 PEBP4Q96S96 227 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 HAUS8Q9BT25 410 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 FAM124BQ9H5Z6 455 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 CNTN6Q9UQ52 1028 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 SMPD1P17405 629 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 XPAP23025 273 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 DNAJB2P25686 324 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 RPL14P50914 215 aaKnown RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 NME5P56597 212 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 IMPG1Q17R60 797 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 NEPROQ6NW34 567 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.88■□□□□ 0.615e-6■■■■■ 55.7
USP48-204ENST00000400301 EFCAB3Q8N7B9 438 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 NCLNQ969V3 563 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 PGLYRP2Q96PD5 576 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 CDH9Q9ULB4 789 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 CXorf49A8MYA2 514 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 BTBD19C9JJ37 291 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 TREHO43280 583 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 TPST1O60507 370 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 PYGLP06737 847 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 CCNB1P14635 433 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 RAG1P15918 1043 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 CRABP2P29373 138 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 L1CAMP32004 1257 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 GIPC2Q8TF65 315 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ZBED3Q96IU2 234 aaPredicted RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 CADM1Q9BY67 442 aaKnown RBP18.88■□□□□ 0.61
USP48-204ENST00000400301 PRKD2Q9BZL6 878 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 HACD3Q9P035 362 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ECM29Q5VYK3 1845 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ATP6V1C1P21283 382 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 NDUFV1P49821 464 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ZNF252P-AS1Q0IIN9 211 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 SOWAHAQ2M3V2 549 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 PCID2Q5JVF3 399 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 GDPD5Q8WTR4 605 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 SLC4A5Q9BY07 1137 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ANKRD6Q9Y2G4 727 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 ADGRA2Q96PE1 1338 aa18.88■□□□□ 0.61
USP48-204ENST00000400301 PFDN1O60925 122 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 SEC24DO94855 1032 aaPredicted RBP18.87■□□□□ 0.61
USP48-204ENST00000400301 C2P06681 752 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 TWF1Q12792 350 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 DYNC1I2Q13409 638 aaKnown RBP18.87■□□□□ 0.61
USP48-204ENST00000400301 ARHGAP17Q68EM7 881 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 SLC41A1Q8IVJ1 513 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 PPP2R3CQ969Q6 453 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 MYLPFQ96A32 169 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CNBD2Q96M20 576 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 VTI1BQ9UEU0 232 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CYTH4Q9UIA0 394 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 ST3GAL5Q9UNP4 418 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 SLC30A1Q9Y6M5 507 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.87■□□□□ 0.61
USP48-204ENST00000400301 UBDO15205 165 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 LILRA4P59901 499 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 DPYSL2Q16555 572 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CTXN3Q4LDR2 81 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 TMEM110Q86TL2 294 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 KCTD4Q8WVF5 259 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CLPTM1LQ96KA5 538 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 TEX264Q9Y6I9 313 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 STBD1O95210 358 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CHRM3P20309 590 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 PRKAA2P54646 552 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 TBX4P57082 545 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 KCNJ11Q14654 390 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 ZNF567Q8N184 647 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 MPP5Q8N3R9 675 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 MUC3BQ9H195 1237 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 ENTPD7Q9NQZ7 604 aa18.87■□□□□ 0.61
USP48-204ENST00000400301 CSE1LP55060 971 aaKnown RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 PKNOX1P55347 436 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 KRT72Q14CN4 511 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 IGDCC3Q8IVU1 814 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ZC3H15Q8WU90 426 aaKnown RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 PIWIL1Q96J94 861 aaKnown RBP18.86■□□□□ 0.61
USP48-204ENST00000400301 GLT1D1Q96MS3 346 aa18.86■□□□□ 0.61
USP48-204ENST00000400301 ING2Q9H160 280 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms