RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SIK3Q9Y2K2 1263 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 GPSM3Q9Y4H4 160 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 ADAMTS20P59510 1910 aa13.81□□□□□ -0.2
VCX3A-202ENST00000398729 URB1O60287 2271 aaKnown RBP13.81□□□□□ -0.2
VCX3A-202ENST00000398729 LGALS16A8MUM7 142 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 EPHB6O15197 1021 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 BCAT2O15382 392 aaPredicted RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 CLDN11O75508 207 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 ADCY5O95622 1261 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 SEMA4FO95754 770 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 TFE3P19532 575 aaPredicted RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 GGCXP38435 758 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 STAT1P42224 750 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 CDH4P55283 916 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 JAM2P57087 298 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 UBXN1Q04323 297 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 SYCP1Q15431 976 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 CST6Q15828 149 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 C9orf64Q5T6V5 341 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 ACBD5Q5T8D3 534 aaPredicted RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 CXorf57Q6NSI4 855 aaKnown RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 C19orf48Q6RUI8 117 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 TRIM72Q6ZMU5 477 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 ARCQ7LC44 396 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 C14orf80Q86SX3 495 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 MMAAQ8IVH4 418 aaKnown RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 NEK11Q8NG66 645 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 SLC20A1Q8WUM9 679 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 TBCBQ99426 244 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 PABPC3Q9H361 631 aaKnown RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 C6orf106Q9H6K1 298 aaPredicted RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 DNAAF2Q9NVR5 837 aaKnown RBP13.8□□□□□ -0.2
VCX3A-202ENST00000398729 FBXL12Q9NXK8 326 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 SLC25A13Q9UJS0 675 aa13.8□□□□□ -0.2
VCX3A-202ENST00000398729 LRRC10BA6NIK2 292 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 TRIM16O95361 564 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 CYP1A1P04798 512 aaPredicted RBP13.79□□□□□ -0.2
VCX3A-202ENST00000398729 ZNF18P17022 549 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 FLT3P36888 993 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 NUMBP49757 651 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 STK19P49842 368 aaPredicted RBP13.79□□□□□ -0.2
VCX3A-202ENST00000398729 IRAK1P51617 712 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 FMO1Q01740 532 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 GRIK2Q13002 908 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 ELAVL3Q14576 367 aaKnown RBP13.79□□□□□ -0.2
VCX3A-202ENST00000398729 C5orf22Q49AR2 442 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 LRRC31Q6UY01 552 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 ALG14Q96F25 216 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 C1orf74Q96LT6 269 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 CAMK1GQ96NX5 476 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 FEM1AQ9BSK4 669 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 NAT10Q9H0A0 1025 aaKnown RBP13.79□□□□□ -0.2
VCX3A-202ENST00000398729 TMEM59LQ9UK28 342 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 VPS28Q9UK41 221 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 TBC1D30Q9Y2I9 924 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.79□□□□□ -0.2
VCX3A-202ENST00000398729 PLXNB3Q9ULL4 1909 aa13.79□□□□□ -0.2
VCX3A-202ENST00000398729 NUMA1Q14980 2115 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 A0A1W2PP55 124 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 MID1O15344 667 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 GJB3O75712 270 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 RNASEH2AO75792 299 aaKnown RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 CHRNB2P17787 502 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 MMP8P22894 467 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 SLC8A1P32418 973 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 RDXP35241 583 aaKnown RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 PSMD8P48556 350 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 TYRO3Q06418 890 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 SCAPQ12770 1279 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 SLC14A1Q13336 389 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 NCAPHQ15003 741 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 ACCSLQ4AC99 568 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 STK40Q8N2I9 435 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 OR52K2Q8NGK3 314 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 C1orf216Q8TAB5 229 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 PTPRN2Q92932 1015 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 BIRC7Q96CA5 298 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 CFAP57Q96MR6 1250 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 ERGIC2Q96RQ1 377 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 OMDQ99983 421 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 MUC3BQ9H195 1237 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 ANLNQ9NQW6 1124 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 METTL5Q9NRN9 209 aaKnown RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 FZD4Q9ULV1 537 aa13.78□□□□□ -0.2
VCX3A-202ENST00000398729 NYNRINQ9P2P1 1898 aaKnown RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 GOLGA4Q13439 2230 aaKnown RBP13.78□□□□□ -0.2
VCX3A-202ENST00000398729 KALRNO60229 2985 aa13.77□□□□□ -0.2
VCX3A-202ENST00000398729 FAM47DPA6NHR8 397 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 LRRC72A6NJI9 287 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 I6L893 689 aaPredicted RBP13.77□□□□□ -0.21
VCX3A-202ENST00000398729 SH3BP5O60239 455 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 FSBPO95073 299 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 CER1O95813 267 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 ADH1BP00325 375 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 IL1BP01584 269 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 RHOCP08134 193 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 C5AR1P21730 350 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 CD27P26842 260 aa13.77□□□□□ -0.21
VCX3A-202ENST00000398729 NSFP46459 744 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms