RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LIMD1Q9UGP4 676 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 CNTNAP5Q8WYK1 1306 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 QSOX1O00391 747 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 RECQL4O94761 1208 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ARF5P84085 180 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 NDUFA5Q16718 116 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 OTUD3Q5T2D3 398 aaPredicted RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 AGBL2Q5U5Z8 902 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 CHADLQ6NUI6 762 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 C11orf63Q6NUN7 778 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 MFSD7Q6UXD7 560 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 PAGE2Q7Z2X7 111 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ZDHHC17Q8IUH5 632 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TMEM132CQ8N3T6 1108 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 KIF2BQ8N4N8 673 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 USP38Q8NB14 1042 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 MTMR9Q96QG7 549 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 WDR24Q96S15 920 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TINF2Q9BSI4 451 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ABCC13Q9NSE7 274 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ABI3Q9P2A4 366 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 POLLQ9UGP5 575 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 DNMT3LQ9UJW3 386 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 KPNA5O15131 536 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 PRODHO43272 600 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 RGS14O43566 566 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 KIF1CO43896 1103 aaKnown RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 TSPAN19P0C672 248 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 GZMAP12544 262 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 PRKAR2AP13861 404 aaKnown RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 FMO4P31512 558 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TROAPQ12815 778 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 SPOCD1Q6ZMY3 1216 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 GPR141Q7Z602 305 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 GPSM1Q86YR5 675 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ARMC8Q8IUR7 673 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 OR10H5Q8NGA6 315 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 SMG7Q92540 1137 aaKnown RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 ULBP1Q9BZM6 244 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 DEC1Q9P2X7 70 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 KIAA0556O60303 1618 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 SPATA31A5Q5VU36 1347 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 SPATA31A7Q8IWB4 1347 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 MED24O75448 989 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 ADH1CP00326 375 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 BMP7P18075 431 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 GP5P40197 560 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TSNQ15631 228 aaKnown RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 NOMO2Q5JPE7 1267 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 PDZK1Q5T2W1 519 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 HEATR4Q86WZ0 1026 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 EID3Q8N140 333 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 BEND7Q8N7W2 519 aaPredicted RBP7.31□□□□□ -1.24
UPF2-203ENST00000397053 FAR1Q8WVX9 515 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 OR8D1Q8WZ84 308 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 TKTL2Q9H0I9 626 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 KLQ9UEF7 1012 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 NDUFAF1Q9Y375 327 aa7.31□□□□□ -1.24
UPF2-203ENST00000397053 CDK12Q9NYV4 1490 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 A0A0A6YYK5 440 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 INPP4BO15327 924 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 FAM20BO75063 409 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 SMNDC1O75940 238 aaKnown RBP eCLIP7.3□□□□□ -1.24
UPF2-203ENST00000397053 PROSCO94903 275 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 EPN2O95208 641 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 USP17L7P0C7H9 530 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 UBTFL6P0CB48 400 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 AMPD1P23109 780 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 ALDH5A1P51649 535 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 MYBPC1Q00872 1141 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 FMR1Q06787 632 aaKnown RBP eCLIP7.3□□□□□ -1.242e-10■■□□□ 12.8
UPF2-203ENST00000397053 MAPK7Q13164 816 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 ZSWIM7Q19AV6 140 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 TBCELQ5QJ74 424 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 KCNMB4Q86W47 210 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 RTL3Q8N8U3 475 aaKnown RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 ZSWIM2Q8NEG5 633 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 DPF2Q92785 391 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 KCNN2Q9H2S1 579 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 ASF1AQ9Y294 204 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 TNPO3Q9Y5L0 923 aaKnown RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 SLC37A4O43826 429 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 APODP05090 189 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 PRG2P13727 222 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 EIF4BP23588 611 aaKnown RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 AQP5P55064 265 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 BMPR2Q13873 1038 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 PSMD5Q16401 504 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 FBXO42Q6P3S6 717 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 C12orf50Q8NA57 414 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 DDHD1Q8NEL9 900 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 HTR3CQ8WXA8 447 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 SYN2Q92777 582 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 IL12RB2Q99665 862 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 BDH2Q9BUT1 245 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 TCOF1Q13428 1488 aaKnown RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 MAGI2Q86UL8 1455 aa7.3□□□□□ -1.24
UPF2-203ENST00000397053 DDTLA6NHG4 134 aaPredicted RBP7.3□□□□□ -1.24
UPF2-203ENST00000397053 RASGRP1O95267 797 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms