RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 RPL17P18621 184 aaKnown RBP15.4■□□□□ 0.06
GPC3-202ENST00000394299 MLLT6P55198 1093 aaPredicted RBP15.4■□□□□ 0.06
GPC3-202ENST00000394299 TAF10Q12962 218 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 DUSP4Q13115 394 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 PSMD5Q16401 504 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 GALNTL6Q49A17 601 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 DEFB128Q7Z7B8 93 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 GRAMD1AQ96CP6 724 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 TBC1D31Q96DN5 1066 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 C8orf48Q96LL4 319 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 PPP1R12CQ9BZL4 782 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 SLC40A1Q9NP59 571 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 CHKBQ9Y259 395 aa15.4■□□□□ 0.06
GPC3-202ENST00000394299 COL4A4P53420 1690 aaPredicted RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 C2orf71A6NGG8 1288 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 SYN3O14994 580 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 POLBP06746 335 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 PGGT1BP53609 377 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 PPP2R5DQ14738 602 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 RNF43Q68DV7 783 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 FUT10Q6P4F1 479 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 RASSF3Q86WH2 238 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 REM2Q8IYK8 340 aaPredicted RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 ATPAF2Q8N5M1 289 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 C10orf82Q8WW14 230 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 MYLK2Q9H1R3 596 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 ATXN3LQ9H3M9 355 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 TRHDEQ9UKU6 1024 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 ZCWPW2A0A1B0GU75 182 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 TPP1O14773 563 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 GALTP07902 379 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 PAPOLAP51003 745 aaKnown RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 TTC31Q49AM3 519 aaPredicted RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 ALFQ53S48 1182 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 HSP90AA5PQ58FG0 334 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 CYS1Q717R9 158 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 MARK2Q7KZI7 788 aaKnown RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 KIF2BQ8N4N8 673 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 FBXO32Q969P5 355 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 CERS2Q96G23 380 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 SLC39A13Q96H72 371 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 FUBP3Q96I24 572 aaKnown RBP eCLIP15.39■□□□□ 0.051e-6■□□□□ 9.9
GPC3-202ENST00000394299 NOL6Q9H6R4 1146 aaKnown RBP15.39■□□□□ 0.05
GPC3-202ENST00000394299 ECT2Q9H8V3 914 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 RXFP1Q9HBX9 757 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 BFARQ9NZS9 450 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 ZFATQ9P243 1243 aa15.39■□□□□ 0.05
GPC3-202ENST00000394299 TTC24A2A3L6 582 aaPredicted RBP15.38■□□□□ 0.05
GPC3-202ENST00000394299 MTMR11A4FU01 709 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 FGFR3P22607 806 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 NMBRP28336 390 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CCNFP41002 786 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TBX4P57082 545 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 NCALDP61601 193 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 BNIP1Q12981 228 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 BFSP2Q13515 415 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ANKRD20A4Q4UJ75 823 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ZNF280DQ6N043 979 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TBC1D1Q86TI0 1168 aaPredicted RBP15.38■□□□□ 0.05
GPC3-202ENST00000394299 CIR1Q86X95 450 aaPredicted RBP15.38■□□□□ 0.05
GPC3-202ENST00000394299 PLCD3Q8N3E9 789 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 MYEOVQ96EZ4 313 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 SERPINB11Q96P15 392 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TRIM62Q9BVG3 475 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TSSK1BQ9BXA7 367 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 BRD8Q9H0E9 1235 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ZNF358Q9NW07 568 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ITGA2BP08514 1039 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CCNCP24863 283 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 YWHAQP27348 245 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 HOXC13P31276 330 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CYP2C18P33260 490 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 APLP1P51693 650 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 PDE1CQ14123 709 aaPredicted RBP15.38■□□□□ 0.05
GPC3-202ENST00000394299 ITPRIPL1Q6GPH6 555 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.38■□□□□ 0.054e-8■■■■□ 19.3
GPC3-202ENST00000394299 ZCCHC23Q6ZST2 131 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TMCO2Q7Z6W1 182 aaPredicted RBP15.38■□□□□ 0.05
GPC3-202ENST00000394299 CMC1Q7Z7K0 106 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 TMEM135Q86UB9 458 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CRIPAKQ8N1N5 446 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ACVR1CQ8NER5 493 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 IPMKQ8NFU5 416 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 SEPT8Q92599 483 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 ERP27Q96DN0 273 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 C20orf27Q9GZN8 174 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 FBXO44Q9H4M3 255 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CATSPERBQ9H7T0 1116 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 CCSER2Q9H7U1 834 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 LRRC40Q9H9A6 602 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 RBM22Q9NW64 420 aaKnown RBP eCLIP15.38■□□□□ 0.054e-11■□□□□ 11.3
GPC3-202ENST00000394299 TLR6Q9Y2C9 796 aa15.38■□□□□ 0.05
GPC3-202ENST00000394299 A0A0G2JND7 137 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 J3KR12 359 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 MTSS1O43312 755 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 HLA-DQB2P05538 268 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 ZNF135P52742 658 aaPredicted RBP15.37■□□□□ 0.05
GPC3-202ENST00000394299 KCNJ2P63252 427 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 MS4A13Q5J8X5 152 aa15.37■□□□□ 0.05
GPC3-202ENST00000394299 C10orf120Q5SQS8 335 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms