RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MRPL10Q7Z7H8 261 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 LRRC34Q8IZ02 419 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 MRPL43Q8N983 215 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 ATP6V1E2Q96A05 226 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 ZNF669Q96BR6 464 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 FICDQ9BVA6 458 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 NEUROG2Q9H2A3 272 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 C15orf41Q9Y2V0 281 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 SBF1O95248 1867 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 STX7O15400 261 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 HOXD8P13378 290 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 CHRNA3P32297 505 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 PHBP35232 272 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 MSH2P43246 934 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 PXNP49023 591 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 PMS2P54278 862 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 AUHQ13825 339 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 LY6G5CQ5SRR4 150 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 TPGS2Q68CL5 300 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 CAPRIN2Q6IMN6 1127 aaKnown RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 FBXL19Q6PCT2 694 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 PHF13Q86YI8 300 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-205ENST00000392004 GSTCDQ8NEC7 633 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 LMO3Q8TAP4 145 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 VCPIP1Q96JH7 1222 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 STRA6Q9BX79 667 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 SLC13A1Q9BZW2 595 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 PRDM16Q9HAZ2 1276 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 BPIFA1Q9NP55 256 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 TMEM59LQ9UK28 342 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 SLC30A1Q9Y6M5 507 aa10.53□□□□□ -0.72
COL6A3-205ENST00000392004 E5RI56 91 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 SKAP2O75563 359 aaPredicted RBP10.52□□□□□ -0.72
COL6A3-205ENST00000392004 SUN1O94901 812 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 PRKCGP05129 697 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 GSTA2P09210 222 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 HAPLN1P10915 354 aaPredicted RBP10.52□□□□□ -0.72
COL6A3-205ENST00000392004 JAMLQ86YT9 394 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 SORCS1Q8WY21 1168 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 PBXIP1Q96AQ6 731 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 FUBP3Q96I24 572 aaKnown RBP eCLIP10.52□□□□□ -0.72
COL6A3-205ENST00000392004 OMDQ99983 421 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 C2orf49Q9BVC5 232 aaPredicted RBP10.52□□□□□ -0.72
COL6A3-205ENST00000392004 DCLK3Q9C098 648 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 ZYG11BQ9C0D3 744 aa10.52□□□□□ -0.72
COL6A3-205ENST00000392004 UBA2Q9UBT2 640 aaPredicted RBP10.52□□□□□ -0.72
COL6A3-205ENST00000392004 RNF103O00237 685 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 SLC9A3R1O14745 358 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 DIAPH2O60879 1101 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 ZBTB16Q05516 673 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 ADCY2Q08462 1091 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 SLC12A1Q13621 1099 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 KYNUQ16719 465 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 LGSNQ5TDP6 509 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 RFX8Q6ZV50 586 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 CDK5RAP1Q96SZ6 601 aaKnown RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 TRMT61BQ9BVS5 477 aaKnown RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 G3BP2Q9UN86 482 aaKnown RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 FAM50BQ9Y247 325 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 PCDHB9Q9Y5E1 797 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 TCRBV7S2A1N4TA0A589 114 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 AXIN1O15169 862 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 LUC7L3O95232 432 aaKnown RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 TNK2Q07912 1038 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 COL9A2Q14055 689 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 DSC3Q14574 896 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 HIF1AQ16665 826 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 HHATQ5VTY9 493 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 AP1ARQ63HQ0 302 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 FAXDC2Q96IV6 333 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 RBM15Q96T37 977 aaKnown RBP eCLIP10.52□□□□□ -0.73
COL6A3-205ENST00000392004 SEMA3CQ99985 751 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 BCO2Q9BYV7 579 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 CARD9Q9H257 536 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 LINC00597Q9H2U6 94 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 ECT2Q9H8V3 914 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 HACD3Q9P035 362 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 CYTH4Q9UIA0 394 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 INTUQ9ULD6 942 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 CA14Q9ULX7 337 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 L3MBTL1Q9Y468 752 aa10.52□□□□□ -0.73
COL6A3-205ENST00000392004 CCDC189A1A4V9 331 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 HLA-EP13747 358 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 TACR2P21452 398 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 JAM2P57087 298 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 RIPK1Q13546 671 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PDK2Q15119 407 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 MON1BQ7L1V2 547 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 GBP7Q8N8V2 638 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 SPPL3Q8TCT6 385 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 BCL7CQ8WUZ0 217 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 SLC35F5Q8WV83 523 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 PRMT1Q99873 361 aaKnown RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 LHX5Q9H2C1 402 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 LATS2Q9NRM7 1088 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 FCF1Q9Y324 198 aaKnown RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 BTNL10A8MVZ5 291 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 UGT2B4P06133 528 aa10.51□□□□□ -0.73
COL6A3-205ENST00000392004 NQO1P15559 274 aaKnown RBP10.51□□□□□ -0.73
COL6A3-205ENST00000392004 CCND1P24385 295 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms