RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SYTL1Q8IYJ3 562 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 LRRC57Q8N9N7 239 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 STYXQ8WUJ0 223 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 ADAMTS14Q8WXS8 1223 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 CLMNQ96JQ2 1002 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 SF3B5Q9BWJ5 86 aaKnown RBP2.45□□□□□ -2.02
VPS13A-206ENST00000376646 EIF2AQ9BY44 585 aaKnown RBP2.45□□□□□ -2.02
VPS13A-206ENST00000376646 PLAC1Q9HBJ0 212 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 ARL15Q9NXU5 204 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 NCKIPSDQ9NZQ3 722 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 TNFSF13BQ9Y275 285 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 ZBTB1Q9Y2K1 713 aa2.45□□□□□ -2.02
VPS13A-206ENST00000376646 COPG1Q9Y678 874 aaKnown RBP2.45□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3DA0A087WVF3 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3IA0A087WXS9 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3EA0A087X179 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3KA0A087X1G2 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3BA6NDS4 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3FA6NER0 549 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 SLC38A8A6NNN8 435 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3LB9A6J9 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 LCATP04180 440 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CYP1A2P05177 515 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3HP0C7X1 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TGFB3P10600 412 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 NPPBP16860 134 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 MLH1P40692 756 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ABATP80404 500 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TNFAIP2Q03169 654 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TLE3Q04726 772 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 SF3A3Q12874 501 aaKnown RBP eCLIP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 GPS2Q13227 327 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 NFATC4Q14934 902 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ZRSR2Q15696 482 aaKnown RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 Q5PR19 223 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ANO1Q5XXA6 986 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3GQ6DHY5 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3CQ6IPX1 549 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CCDC174Q6PII3 467 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 RNF144BQ7Z419 303 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 FAM217AQ8IXS0 508 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TBC1D3Q8IZP1 549 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 IQCF1Q8N6M8 205 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 LMO3Q8TAP4 145 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 FAM110DQ8TAY7 271 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 WDR77Q9BQA1 342 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 HDHD5Q9BXW7 423 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 STK33Q9BYT3 514 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 PLEKHB1Q9UF11 243 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CA14Q9ULX7 337 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ICKQ9UPZ9 632 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CKAP5Q14008 2032 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 A0A087WV62 115 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CYSRT1A8MQ03 144 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 SPTLC2O15270 562 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CREB3O43889 395 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 PIP5K1CO60331 668 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 GLP2RO95838 553 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CYP3A4P08684 503 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 KLRC2P26717 231 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TNFSF8P32971 234 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 HALP42357 657 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 TECP42680 631 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ENTPD1P49961 510 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 KRT72Q14CN4 511 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ALG10Q5BKT4 473 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ALG10BQ5I7T1 473 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 SLC30A9Q6PML9 568 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 SLC25A41Q8N5S1 370 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ZNF527Q8NB42 609 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 ADPRHL1Q8NDY3 354 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 APOLD1Q96LR9 279 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 KRCC1Q9NPI7 259 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-206ENST00000376646 PCDHA10Q9Y5I2 948 aa2.44□□□□□ -2.02
VPS13A-206ENST00000376646 CYP3A7-CYP3A51PA0A087WV96 503 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 MCIDASD6RGH6 385 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 LYL1P12980 280 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CYP3A7P24462 503 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ITGB8P26012 769 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CHKAP35790 457 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ADPRHP54922 357 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 DSCR9P59020 149 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 SELENOVP59797 346 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 RHAGQ02094 409 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 STARD3Q14849 445 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CAPRIN2Q6IMN6 1127 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 Q6ZSV7 163 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 Q6ZTC4 211 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 RBM23Q86U06 439 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM200AQ86VY9 491 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 KLBQ86Z14 1044 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CADM3Q8N126 398 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 ANKRD42Q8N9B4 389 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 HMGB4Q8WW32 186 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM41AQ96HV5 264 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TASP1Q9H6P5 420 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 PNRC2Q9NPJ4 139 aaKnown RBP2.43□□□□□ -2.02
VPS13A-206ENST00000376646 TM7SF3Q9NS93 570 aa2.43□□□□□ -2.02
VPS13A-206ENST00000376646 CNTN6Q9UQ52 1028 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms