RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 K7ENP7 123 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 DXOO77932 396 aaKnown RBP11.58□□□□□ -0.56
RTN3-204ENST00000354497 IVLP07476 585 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 ALPPL2P10696 532 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 C5AR1P21730 350 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 IRX1P78414 480 aaPredicted RBP11.58□□□□□ -0.56
RTN3-204ENST00000354497 CDH18Q13634 790 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 STK38Q15208 465 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 SGO2Q562F6 1265 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 CEP135Q66GS9 1140 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 INO80CQ6PI98 192 aaPredicted RBP11.58□□□□□ -0.56
RTN3-204ENST00000354497 SLC25A45Q8N413 288 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 ZNF557Q8N988 423 aaPredicted RBP11.58□□□□□ -0.56
RTN3-204ENST00000354497 CCDC150Q8NCX0 1101 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 OR4C6Q8NH72 309 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 TTC17Q96AE7 1141 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 MRGPRX3Q96LB0 322 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 ARHGAP9Q9BRR9 750 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 CUEDC2Q9H467 287 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 LRRC4Q9HBW1 653 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 ASCL3Q9NQ33 180 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 CYTH4Q9UIA0 394 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 TPX2Q9ULW0 747 aaKnown RBP11.58□□□□□ -0.56
RTN3-204ENST00000354497 ERVW-1Q9UQF0 538 aa11.58□□□□□ -0.56
RTN3-204ENST00000354497 TARSL2A2RTX5 802 aaKnown RBP11.57□□□□□ -0.56
RTN3-204ENST00000354497 RTN2O75298 545 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 MOCS3O95396 460 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 LATS1O95835 1130 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 DGKAP23743 735 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 SLC6A4P31645 630 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 SLC11A2P49281 568 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 ADIGQ0VDE8 80 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 GOLGA7BQ2TAP0 167 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 PITRM1Q5JRX3 1037 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 RAB41Q5JT25 222 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 PIK3R6Q5UE93 754 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 MMS22LQ6ZRQ5 1243 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 IQCHQ86VS3 1027 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 HJURPQ8NCD3 748 aaPredicted RBP11.57□□□□□ -0.56
RTN3-204ENST00000354497 CCDC97Q96F63 343 aaPredicted RBP11.57□□□□□ -0.56
RTN3-204ENST00000354497 KLHDC7BQ96G42 594 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 RPL10LQ96L21 214 aaKnown RBP11.57□□□□□ -0.56
RTN3-204ENST00000354497 USP28Q96RU2 1077 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 FAM129BQ96TA1 746 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 C7orf25Q9BPX7 421 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 PAIP2Q9BPZ3 127 aaKnown RBP11.57□□□□□ -0.56
RTN3-204ENST00000354497 CALN1Q9BXU9 219 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 UBXN6Q9BZV1 441 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 TSPY26PQ9H489 355 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 EVA1BQ9NVM1 165 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 STOML2Q9UJZ1 356 aa11.57□□□□□ -0.56
RTN3-204ENST00000354497 NRDCO43847 1150 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 TRIM49P0CI25 452 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 TRIM49CP0CI26 452 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 THEGLP0DJG4 465 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 CKMT1AP12532 417 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 MZF1P28698 734 aaPredicted RBP11.56□□□□□ -0.56
RTN3-204ENST00000354497 GCLMP48507 274 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 METAP1P53582 386 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 MTA1Q13330 715 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 SLC39A14Q15043 492 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 SETMARQ53H47 684 aaPredicted RBP11.56□□□□□ -0.56
RTN3-204ENST00000354497 BSPRYQ5W0U4 402 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 SIX6OS1Q8N1H7 587 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 IFI44Q8TCB0 444 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 TAS1R2Q8TE23 839 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 SNRNP27Q8WVK2 155 aaKnown RBP11.56□□□□□ -0.56
RTN3-204ENST00000354497 KLK6Q92876 244 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 TATDN2Q93075 761 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 ATXN7L3BQ96GX2 97 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 APOLD1Q96LR9 279 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 CAAP1Q9H8G2 361 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 ARHGAP20Q9P2F6 1191 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 SLCO3A1Q9UIG8 710 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 INTS6Q9UL03 887 aaKnown RBP11.56□□□□□ -0.56
RTN3-204ENST00000354497 DMTF1Q9Y222 760 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 FRMD4BQ9Y2L6 1034 aa11.56□□□□□ -0.56
RTN3-204ENST00000354497 KNTC1P50748 2209 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 YJEFN3A6XGL0 299 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 E7ENQ6 273 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 PRAMEF26H0Y7S4 382 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 LATO43561 262 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 ACSL4O60488 711 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 NR3C1P04150 777 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 TUBB4AP04350 444 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 SRPRAP08240 638 aaKnown RBP11.55□□□□□ -0.56
RTN3-204ENST00000354497 LCP1P13796 627 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 USP8P40818 1118 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 AFMP43652 599 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 STK19P49842 368 aaPredicted RBP11.55□□□□□ -0.56
RTN3-204ENST00000354497 DUSP3P51452 185 aaPredicted RBP11.55□□□□□ -0.56
RTN3-204ENST00000354497 VAMP7P51809 220 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 RPS24P62847 133 aaKnown RBP11.55□□□□□ -0.56
RTN3-204ENST00000354497 ECT2LQ008S8 904 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 KCNMA1Q12791 1236 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 OVGP1Q12889 678 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 ISXQ2M1V0 245 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 FAM133BQ5BKY9 247 aaKnown RBP11.55□□□□□ -0.56
RTN3-204ENST00000354497 MPP7Q5T2T1 576 aa11.55□□□□□ -0.56
RTN3-204ENST00000354497 PM20D1Q6GTS8 502 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms