RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 NETO2Q8NC67 525 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 OR14C36Q8NHC7 312 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.73□□□□□ -0.21
RFFL-201ENST00000315249 PAFAH2Q99487 392 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 KNDC1Q76NI1 1749 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 IGF2BP3O00425 579 aaKnown RBP eCLIP13.73□□□□□ -0.21
RFFL-201ENST00000315249 DDX3XO00571 662 aaKnown RBP eCLIP13.73□□□□□ -0.213e-14■■■□□ 16.2
RFFL-201ENST00000315249 NPY2RP49146 381 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 FBXO39Q8N4B4 442 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 MDM1Q8TC05 714 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 FERD3LQ96RJ6 166 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 PARVBQ9HBI1 364 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 BCL9LQ86UU0 1499 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 ZNF839A8K0R7 811 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 NFATC1O95644 943 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 CDH2P19022 906 aaPredicted RBP13.73□□□□□ -0.21
RFFL-201ENST00000315249 KDELR1P24390 212 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 HSD17B3P37058 310 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 CPA2P48052 419 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 ITGA9Q13797 1035 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 GALNT3Q14435 633 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 PRSS55Q6UWB4 352 aaPredicted RBP13.73□□□□□ -0.21
RFFL-201ENST00000315249 PTCH2Q9Y6C5 1203 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 IFNA16P05015 189 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 SLC9A5Q14940 896 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 AASDHQ4L235 1098 aaPredicted RBP13.73□□□□□ -0.21
RFFL-201ENST00000315249 SERPINB12Q96P63 405 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 ABCC6O95255 1503 aa13.73□□□□□ -0.21
RFFL-201ENST00000315249 TSPAN1O60635 241 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 MAP3K10Q02779 954 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PRKD2Q9BZL6 878 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 BAZ2AQ9UIF9 1905 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 GOT1P17174 413 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 TFE3P19532 575 aaPredicted RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 GCKP35557 465 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 MAP2K2P36507 400 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 CRADDP78560 199 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 SMARCB1Q12824 385 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 ZNF618Q5T7W0 954 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PRR23BQ6ZRT6 265 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 DNAJC1Q96KC8 554 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 TMEM51Q9NW97 253 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.72□□□□□ -0.213e-7■■■■□ 22.4
RFFL-201ENST00000315249 TBC1D14Q9P2M4 693 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 CACNB4O00305 520 aaPredicted RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 C8AP07357 584 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PDHA1P08559 390 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PTPN2P17706 415 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 ELK3P41970 407 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 NUDT2P50583 147 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 MRPS5P82675 430 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 CNGA3Q16281 694 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 ATP6AP1LQ52LC2 224 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 SPANXN3Q5MJ09 141 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 SNRNP25Q9BV90 132 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 MTO1Q9Y2Z2 717 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 NR5A2O00482 541 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 XPO1O14980 1071 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 PER2O15055 1255 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PEX5P50542 639 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 CRY1Q16526 586 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PARGQ86W56 976 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 CLEC4DQ8WXI8 215 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 VPS50Q96JG6 964 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.72□□□□□ -0.21
RFFL-201ENST00000315249 MRPS17Q9Y2R5 130 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 ANKDD1BA6NHY2 528 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 CLYBLQ8N0X4 340 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 LMO7Q8WWI1 1683 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 KRT6AP02538 564 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 KRT6BP04259 564 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 KRT6CP48668 564 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 VARS2Q5ST30 1063 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 GPSM1Q86YR5 675 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 RASAL3Q86YV0 1011 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 PPP1R10Q96QC0 940 aaKnown RBP13.72□□□□□ -0.21
RFFL-201ENST00000315249 B3GNT5Q9BYG0 378 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 TAS2R14Q9NYV8 317 aa13.72□□□□□ -0.21
RFFL-201ENST00000315249 NFAT5O94916 1531 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 XRN1Q8IZH2 1706 aaKnown RBP13.71□□□□□ -0.21
RFFL-201ENST00000315249 SLC25A14O95258 325 aaPredicted RBP13.71□□□□□ -0.21
RFFL-201ENST00000315249 C1RP00736 705 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 SEL1L3Q68CR1 1132 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 SLC22A9Q8IVM8 553 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 DNAJC19Q96DA6 116 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 CNGB3Q9NQW8 809 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 VAV3Q9UKW4 847 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 PPIEQ9UNP9 301 aaKnown RBP13.71□□□□□ -0.21
RFFL-201ENST00000315249 FSTL1Q12841 308 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 MAMLD1Q13495 774 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 E2F4Q16254 413 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 SIX5Q8N196 739 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 EPS8L1Q8TE68 723 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 CDC42EP4Q9H3Q1 356 aaKnown RBP13.71□□□□□ -0.21
RFFL-201ENST00000315249 NCKIPSDQ9NZQ3 722 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 RGPD5Q99666 1765 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 PAGE1O75459 146 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 RARAP10276 462 aa13.71□□□□□ -0.21
RFFL-201ENST00000315249 ZNF135P52742 658 aaPredicted RBP13.71□□□□□ -0.21
RFFL-201ENST00000315249 ZNF143P52747 638 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms