RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FSCBQ5H9T9 825 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 TMC7Q7Z402 723 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 FAM71AQ8IYT1 594 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 UBA3Q8TBC4 463 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 APOPT1Q96IL0 206 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 SEZ6LQ9BYH1 1024 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 APOBEC3GQ9HC16 384 aaKnown RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 MRPL47Q9HD33 250 aaKnown RBP11.14□□□□□ -0.63
LSM3-201ENST00000306024 ARHGAP26Q9UNA1 814 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 HEY1Q9Y5J3 304 aa11.14□□□□□ -0.63
LSM3-201ENST00000306024 TBKBP1A7MCY6 615 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 GSTT2P0CG29 244 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 GSTT2BP0CG30 244 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 GZMAP12544 262 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ENO3P13929 434 aaPredicted RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 PROZP22891 400 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 PLOD1Q02809 727 aaPredicted RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 RELAQ04206 551 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ITGADQ13349 1161 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 IKBKEQ14164 716 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 MORF4L2Q15014 288 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 CCDC153Q494R4 210 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 RHBDF2Q6PJF5 856 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 PCGF5Q86SE9 256 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ERI1Q8IV48 349 aaKnown RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 ADGRF2Q8IZF7 708 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ZNF786Q8N393 782 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 RNF148Q8N7C7 305 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 AGR3Q8TD06 166 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 EPS8L1Q8TE68 723 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ZNF606Q8WXB4 792 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 SRPK1Q96SB4 655 aaKnown RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 ATAD3AQ9NVI7 634 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ADAMTS6Q9UKP5 1117 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 SH3PXD2BA1X283 911 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ZBTB11O95625 1053 aaPredicted RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 CCDC130P13994 396 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 RGS7P49802 495 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ARPC4P59998 168 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 FAAP100Q0VG06 881 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 CTC1Q2NKJ3 1217 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 CCDC33Q8N5R6 958 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 BORCS5Q969J3 196 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 C11orf49Q9H6J7 331 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 PARVBQ9HBI1 364 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 DNPEPQ9ULA0 475 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 C1orf232A0A0U1RR37 186 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 GOLGA8TH3BQL2 631 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 VILLO15195 856 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 HOXA2O43364 376 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 NUDT2P50583 147 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 CLCN2P51788 898 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 BCAR1P56945 870 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 EGFLAMQ63HQ2 1017 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 POTEHQ6S545 545 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 ZNF677Q86XU0 584 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 TMCO5AQ8N6Q1 288 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 TTC16Q8NEE8 873 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 RMND5BQ96G75 393 aaPredicted RBP11.13□□□□□ -0.63
LSM3-201ENST00000306024 TMEM176AQ96HP8 235 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 TMEM79Q9BSE2 394 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 KANSL3Q9P2N6 904 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 DNAJC16Q9Y2G8 782 aa11.13□□□□□ -0.63
LSM3-201ENST00000306024 CNOT3O75175 753 aaKnown RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 DGKIO75912 1065 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 KRT38O76015 456 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TGDSO95455 350 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 CRTAMO95727 393 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TFAP2AP05549 437 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ACAT1P24752 427 aaKnown RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 ADAM17P78536 824 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ENPEPQ07075 957 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TLR1Q15399 786 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 RGS21Q2M5E4 152 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 C9orf57Q5W0N0 161 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 CASC4Q6P4E1 433 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TDRPQ86YL5 185 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 NDUFAF2Q8N183 169 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TMEM121Q9BTD3 319 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 CACNG4Q9UBN1 327 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 DAPK2Q9UIK4 370 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 MYRFQ9Y2G1 1151 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 DERAQ9Y315 318 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 CEP290O15078 2479 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ARL5CA6NH57 179 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 CALB1P05937 261 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 MAPK10P53779 464 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 NOMO2Q5JPE7 1267 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TMEM214Q6NUQ4 689 aaKnown RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 SCN4BQ8IWT1 228 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 SENP8Q96LD8 212 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 C10orf88Q9H8K7 445 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 PRDM16Q9HAZ2 1276 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ATP8B3O60423 1300 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TRIP12Q14669 1992 aaPredicted RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 A0A0U1RQF3 1178 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 PMM2O15305 246 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TYROBPO43914 113 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 PCSK1P29120 753 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ALDH7A1P49419 539 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms