RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SH3PXD2BA1X283 911 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 BTBD19C9JJ37 291 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RP2O75695 350 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MBD4O95243 580 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZBTB11O95625 1053 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CNPP09543 421 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NME5P56597 212 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CHI3L2Q15782 390 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SPDYE7PQ495Y7 208 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PTPN20Q4JDL3 420 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 BOLA3Q53S33 107 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 C3orf33Q6P1S2 294 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ANKRD23Q86SG2 305 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PQLC1Q8N2U9 271 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TCEAL4Q96EI5 215 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ITCHQ96J02 903 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 INO80BQ9C086 356 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF112Q9UJU3 913 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FAM208BQ5VWN6 2430 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PER2O15055 1255 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PLOD3O60568 738 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 IFNA10P01566 189 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 IFNA4P05014 189 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ATP1A3P13637 1013 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CDK9P50750 372 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NEDD8Q15843 81 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CNPY1Q3B7I2 92 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF667Q5HYK9 610 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 HAGHLQ6PII5 290 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ATP6V1C2Q8NEY4 427 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 GCNAQ96QF7 691 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 EGFL8Q99944 293 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RNF32Q9H0A6 362 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PCDHB16Q9NRJ7 776 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CLIC5Q9NZA1 410 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PALD1Q9ULE6 856 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ALG5Q9Y673 324 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PNPLA7Q6ZV29 1317 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ASB14A6NK59 587 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 KLRF2D3W0D1 207 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NFKB1P19838 968 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 FGFR4P22455 802 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC6A4P31645 630 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ETFBP38117 255 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NNMTP40261 264 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CYP27A1Q02318 531 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PIWIL4Q7Z3Z4 852 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 UBE2E3Q969T4 207 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SIK2Q9H0K1 926 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TASP1Q9H6P5 420 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MAT2BQ9NZL9 334 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 APEX2Q9UBZ4 518 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF222Q9UK12 451 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 S100A8P05109 93 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CYP2C8P10632 490 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 HNRNPFP52597 415 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 IL5RAQ01344 420 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC9A5Q14940 896 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TMPRSS11AQ6ZMR5 421 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PHACTR4Q8IZ21 702 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SVOPLQ8N434 492 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 OR6P1Q8NGX9 317 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 IRGQQ8WZA9 623 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CLPBQ9H078 707 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ANKRA2Q9H9E1 313 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 UFSP2Q9NUQ7 469 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DGKBQ9Y6T7 804 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 DISP3Q9P2K9 1392 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PREX2Q70Z35 1606 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 UBDO15205 165 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ATP9BO43861 1147 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 NDUFS3O75489 264 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 FTLP02792 175 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CYP3A4P08684 503 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ETV6P41212 452 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 C2orf80Q0P641 193 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 USPL1Q5W0Q7 1092 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SMIM15Q7Z3B0 74 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SH3RF3Q8TEJ3 882 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 CCDC115Q96NT0 180 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 PCDH9Q9HC56 1237 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SAMSN1Q9NSI8 373 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GRIP1Q9Y3R0 1128 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 LOC100506127A0A0U1RQW1 187 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MAGEC1O60732 1142 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TRIM32Q13049 653 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF268Q14587 947 aaPredicted RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 OLFML2AQ68BL7 652 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 RAB11FIP2Q7L804 512 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 GSPT2Q8IYD1 628 aaKnown RBP4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ELMOD2Q8IZ81 293 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 TGFBRAP1Q8WUH2 860 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC39A8Q9C0K1 460 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLC6A16Q9GZN6 736 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 SLA2Q9H6Q3 261 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ANKZF1Q9H8Y5 726 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 COPRSQ9NQ92 184 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 MAP3K19Q56UN5 1328 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 WDPCPO95876 746 aa4.91□□□□□ -1.62
CSMD3-201ENST00000297405 ATP1A1P05023 1023 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms