RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CDH18Q13634 790 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NRF1Q16656 503 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 DNAAF5Q86Y56 855 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 LRRC19Q9H756 370 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TULP2O00295 520 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 KRT36O76013 467 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CPSF4O95639 269 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CCNA2P20248 432 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PSMD4P55036 377 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PTSQ03393 145 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 BROXQ5VW32 411 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PROSER1Q86XN7 944 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TMEM132CQ8N3T6 1108 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 LNX1Q8TBB1 728 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 ACTL9Q8TC94 416 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 SYTL5Q8TDW5 730 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 DSEQ9UL01 958 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TJP1Q07157 1748 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FCHO1O14526 889 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 OR6B1O95007 311 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 VDRP11473 427 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PAICSP22234 425 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 POU5F2Q8N7G0 328 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FAM129BQ96TA1 746 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CLPBQ9H078 707 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 MIEF1Q9NQG6 463 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 DNAJC13O75165 2243 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PTDSS1P48651 473 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 N4BP2L1Q5TBK1 243 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 MMADHCQ9H3L0 296 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 TIAM2Q8IVF5 1701 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 FAM25EA8MYX2 175 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 RARBP10826 455 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NCAM1P13591 858 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 EFCAB12Q6NXP0 572 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CYP2R1Q6VVX0 501 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 NECAB2Q7Z6G3 386 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 S100ZQ8WXG8 99 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 AP3S1Q92572 193 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 SEPT5Q99719 369 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 PDGFCQ9NRA1 345 aa10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CRNNQ9UBG3 495 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 HBS1LQ9Y450 684 aaKnown RBP10.03□□□□□ -0.8
COL6A3-201ENST00000295550 CRYBG1Q9Y4K1 1723 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 IQCMA0A1B0GVH7 501 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 KATNA1O75449 491 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 RPN2P04844 631 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 VAV1P15498 845 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 MMP13P45452 471 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 FAXCQ5TGI0 409 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 DUPD1Q68J44 220 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 MARK2Q7KZI7 788 aaKnown RBP10.02□□□□□ -0.8
COL6A3-201ENST00000295550 CCDC36Q8IYA8 594 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 KBTBD8Q8NFY9 601 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 MYDGFQ969H8 173 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 SLC4A9Q96Q91 983 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 TAS2R14Q9NYV8 317 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 LIMD1Q9UGP4 676 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 ANKRD6Q9Y2G4 727 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 RAD54BQ9Y620 910 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 AGRPO00253 132 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 SHBGP04278 402 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 IRF1P10914 325 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 PECAM1P16284 738 aaPredicted RBP10.02□□□□□ -0.8
COL6A3-201ENST00000295550 CDC25CP30307 473 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 APOBEC3HQ6NTF7 200 aaKnown RBP10.02□□□□□ -0.8
COL6A3-201ENST00000295550 CCDC185Q8N715 623 aa10.02□□□□□ -0.8
COL6A3-201ENST00000295550 BCLAF3A2AJT9 711 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 RNF225M0QZC1 329 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 EML1O00423 815 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 AP3D1O14617 1153 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PRRG1O14668 218 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PAEPP09466 180 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 HGSNATQ68CP4 663 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ITGA11Q9UKX5 1188 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 TMEM114B3SHH9 223 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ADCY6O43306 1168 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 VPS4BO75351 444 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PREPLQ4J6C6 727 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ULK3Q6PHR2 472 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 STK32CQ86UX6 486 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 C8orf59Q8N0T1 100 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PJA1Q8NG27 643 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PCM1Q15154 2024 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 CD3EAPO15446 510 aaKnown RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 PLOD3O60568 738 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 DRD4P21917 467 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 LRPAP1P30533 357 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 RARRES1P49788 294 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 GRIK3Q13003 919 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 MAMLD1Q13495 774 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 FGD3Q5JSP0 725 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 LRRC17Q8N6Y2 441 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ITFG1Q8TB96 612 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 ZKSCAN4Q969J2 545 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-201ENST00000295550 SLITRK1Q96PX8 696 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 UGT2B28Q9BY64 529 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 VTI1BQ9UEU0 232 aa10.02□□□□□ -0.81
COL6A3-201ENST00000295550 VANGL2Q9ULK5 521 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms