RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 GPR142Q7Z601 462 aa21.77■■□□□ 1.08
TRIM28-201ENST00000253024 KCTD4Q8WVF5 259 aa21.77■■□□□ 1.08
TRIM28-201ENST00000253024 CATSPER2Q96P56 530 aa21.77■■□□□ 1.08
TRIM28-201ENST00000253024 BFARQ9NZS9 450 aa21.77■■□□□ 1.08
TRIM28-201ENST00000253024 PIRO00625 290 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 SETSIPP0DME0 302 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 CXCR3P49682 368 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 PLK1P53350 603 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 SNX16P57768 344 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 TBL3Q12788 808 aaKnown RBP21.76■■□□□ 1.07
TRIM28-201ENST00000253024 GRM3Q14832 879 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 PCSK7Q16549 785 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 SFT2D3Q587I9 215 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 KCNMB4Q86W47 210 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 TDRD5Q8NAT2 981 aaKnown RBP21.76■■□□□ 1.07
TRIM28-201ENST00000253024 TTC16Q8NEE8 873 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 MLPHQ9BV36 600 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-201ENST00000253024 DUSP16Q9BY84 665 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 TKTL2Q9H0I9 626 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 CRTAC1Q9NQ79 661 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 CPA4Q9UI42 421 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 ANGPTL2Q9UKU9 493 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 KCNH4Q9UQ05 1017 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 NEMP2A6NFY4 417 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 OPHN1O60890 802 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 CCNA1P78396 465 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 MPP1Q00013 466 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 SLC41A1Q8IVJ1 513 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 WNT8BQ93098 351 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 CYP4F12Q9HCS2 524 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 DCDC2Q9UHG0 476 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 DOCK3Q8IZD9 2030 aa21.76■■□□□ 1.07
TRIM28-201ENST00000253024 MYOCOSA0A1B0GUC4 107 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 PPP1R12AO14974 1030 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 TSPAN8P19075 237 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 ADRA1BP35368 520 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 AQP4P55087 323 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 CCL14Q16627 93 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 ANKRD20A4Q4UJ75 823 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 UNC93AQ86WB7 457 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 IFNLR1Q8IU57 520 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 LRRC52Q8N7C0 313 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 PCED1BQ96HM7 432 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 MAML3Q96JK9 1138 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 BIRC5O15392 142 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 MAGEC1O60732 1142 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 RNASEH1O60930 286 aaKnown RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 PMPCBO75439 489 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 ENO3P13929 434 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 RAG1P15918 1043 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 CLCNKBP51801 687 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 RAP1GDS1P52306 607 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 DSG1Q02413 1049 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 SEPT6Q14141 434 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 DNAL1Q4LDG9 190 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 NET1Q7Z628 596 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 URGCPQ8TCY9 931 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 GATA5Q9BWX5 397 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 STAP1Q9ULZ2 295 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 CCDC189A1A4V9 331 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 MSI1O43347 362 aaKnown RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 YBX3P16989 372 aaKnown RBP eCLIP21.75■■□□□ 1.073e-20■□□□□ 9.2
TRIM28-201ENST00000253024 MPP3Q13368 585 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 USP10Q14694 798 aaKnown RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 TRMT5Q32P41 509 aaKnown RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 C9orf131Q5VYM1 1079 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 ARCQ7LC44 396 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 STRADAQ7RTN6 431 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 CRYBG2Q8N1P7 616 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 C3orf58Q8NDZ4 430 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 TNIP3Q96KP6 325 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 ECSITQ9BQ95 431 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 SUDS3Q9H7L9 328 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-201ENST00000253024 PLEKHA5Q9HAU0 1116 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 SLC2A6Q9UGQ3 507 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 CDH22Q9UJ99 828 aa21.75■■□□□ 1.07
TRIM28-201ENST00000253024 F8W810 466 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 MX2P20592 715 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 ITGAXP20702 1163 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 NOS2P35228 1153 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 CCNIQ14094 377 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 SNX32Q86XE0 403 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 ZDHHC17Q8IUH5 632 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 GCNAQ96QF7 691 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 TINF2Q9BSI4 451 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 KATNBL1Q9H079 304 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 VTA1Q9NP79 307 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 ZNF212Q9UDV6 495 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 OR12D3Q9UGF7 316 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 XPO1O14980 1071 aaKnown RBP21.74■■□□□ 1.07
TRIM28-201ENST00000253024 VAPBO95292 243 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 FAM200BP0CF97 657 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 CHRNA4P43681 627 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 POU5F1BQ06416 359 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 DUSP28Q4G0W2 176 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 MYLK4Q86YV6 388 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-201ENST00000253024 SCAMP5Q8TAC9 235 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 VPS39Q96JC1 886 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 NPY6RQ99463 290 aa21.74■■□□□ 1.07
TRIM28-201ENST00000253024 FERMT1Q9BQL6 677 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms