RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MGAT5BQ3V5L5 792 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PPP2R2DQ66LE6 453 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MZT2BQ6NZ67 158 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD6Q8NC69 237 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLHC1Q8NHS4 586 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 UCN3Q969E3 161 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ECHDC3Q96DC8 303 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CENPOQ9BU64 300 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HAUS4Q9H6D7 363 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RXFP1Q9HBX9 757 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MYOZ2Q9NPC6 264 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RASSF1Q9NS23 344 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL8Q9P2G9 620 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF624Q9P2J8 865 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DNMT3LQ9UJW3 386 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RNF24Q9Y225 148 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAP3K2Q9Y2U5 619 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLDN4O14493 209 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RAD51BO15315 384 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MFAP3LO75121 409 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 UBXN7O94888 489 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TFE3P19532 575 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NAMPTP43490 491 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PPP3CCP48454 512 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DLG1Q12959 904 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAPK7Q13164 816 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NFIL3Q16649 462 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZSWIM7Q19AV6 140 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SWT1Q5T5J6 900 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CREB3L3Q68CJ9 461 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SULT1C3Q6IMI6 304 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PSRC1Q6PGN9 363 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM26Q6ZUK4 368 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TAS2R42Q7RTR8 314 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SPICE1Q8N0Z3 855 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GALNT4Q8N4A0 578 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RNFT2Q96EX2 444 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PANX3Q96QZ0 392 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KCNK16Q96T55 309 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CINPQ9BW66 212 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MRPL4Q9BYD3 311 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 USP44Q9H0E7 712 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SP140LQ9H930 580 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SAYSD1Q9NPB0 183 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 A1CFQ9NQ94 594 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TDP1Q9NUW8 608 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ATXN10Q9UBB4 475 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RBM8AQ9Y5S9 174 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HYKKA2RU49 373 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ODC1P11926 461 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 UGT1A1P22309 533 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BMI1P35226 326 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEA10P43363 369 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NIPAL4Q0D2K0 466 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MPP2Q14168 576 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C15orf59Q2T9L4 293 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM179Q6ZVK1 233 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 COPS6Q7L5N1 327 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TTC7BQ86TV6 843 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SRFBP1Q8NEF9 429 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMIEQ8NEW7 156 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NMD3Q96D46 503 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CEP295NLQ96MC4 621 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SPATA33Q96N06 139 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 UPB1Q9UBR1 384 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHA10Q9Y5I2 948 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 COMMD3-BMI1R4GMX3 469 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MYO5CQ9NQX4 1742 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANKARQ7Z5J8 1434 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD34BA5PLL1 514 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TCP10L2B9ZVM9 353 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KATNA1O75449 491 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MYL2P10916 166 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PDGFRAP16234 1089 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 STAT5AP42229 794 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAPK8P45983 427 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MMP15P51511 669 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 STAT5BP51692 787 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PGDP52209 483 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CACNA2D1P54289 1103 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ITGA1P56199 1179 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 USP46P62068 366 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP4F2P78329 520 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP4F3Q08477 520 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PWP1Q13610 501 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PDCD4Q53EL6 469 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF667Q5HYK9 610 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PAGE2BQ5JRK9 111 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC74BQ6ZQY2 392 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PRR23BQ6ZRT6 265 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MSANTD1Q6ZTZ1 278 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CHCHD4Q8N4Q1 142 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TTC29Q8NA56 475 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PNMA1Q8ND90 353 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CMTM5Q96DZ9 223 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DPY30Q9C005 99 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP4F11Q9HBI6 524 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NDOR1Q9UHB4 597 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PITPNM1O00562 1244 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PODXLO00592 558 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms