RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TRBV5-7A0A0A0MS05 114 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 SLC38A8A6NNN8 435 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 LCKP06239 509 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 HOXC6P09630 235 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 TGFB3P10600 412 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 ABCB4P21439 1286 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 AK2P54819 239 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 SELENOVP59797 346 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 ROR2Q01974 943 aaKnown RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 RHAGQ02094 409 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 EGR4Q05215 589 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 GPS2Q13227 327 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 GALNT3Q14435 633 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 ARL13AQ5H913 290 aaPredicted RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 IL31Q6EBC2 164 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 PDXDC1Q6P996 788 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 Q6ZTK2 550 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 TMEM217Q8N7C4 229 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 ELP5Q8TE02 316 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 ZNF419Q96HQ0 510 aaPredicted RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 SGCZQ96LD1 299 aa4.61□□□□□ -1.67
CD44-239ENST00000639002 SORBS1Q9BX66 1292 aaKnown RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 PNRC2Q9NPJ4 139 aaKnown RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 MAGED2Q9UNF1 606 aaPredicted RBP4.61□□□□□ -1.67
CD44-239ENST00000639002 AQP12BA6NM10 295 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 CPA1P15085 419 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 ARSBP15848 533 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 AKT1P31749 480 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 TNFSF8P32971 234 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 NEK3P51956 506 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 DSCR9P59020 149 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 PKP1Q13835 747 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 HLTFQ14527 1009 aaKnown RBP eCLIP4.6□□□□□ -1.67
CD44-239ENST00000639002 TRIM60Q495X7 471 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 CAPRIN2Q6IMN6 1127 aaKnown RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 ERAP2Q6P179 960 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 KIAA1324Q6UXG2 1013 aaKnown RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 Q6ZTC4 211 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 NRSN1Q8IZ57 195 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 SLC25A41Q8N5S1 370 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 GABPB2Q8TAK5 448 aaPredicted RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 LMO3Q8TAP4 145 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 PHF21BQ96EK2 531 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 LMLNQ96KR4 655 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 PRPF18Q99633 342 aaKnown RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 POLDIP3Q9BY77 421 aaKnown RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 DCLK3Q9C098 648 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 KRCC1Q9NPI7 259 aaPredicted RBP4.6□□□□□ -1.67
CD44-239ENST00000639002 CD93Q9NPY3 652 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 MYO6Q9UM54 1294 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 CNTN6Q9UQ52 1028 aa4.6□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3DA0A087WVF3 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3IA0A087WXS9 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3EA0A087X179 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3KA0A087X1G2 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3BA6NDS4 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3FA6NER0 549 aaPredicted RBP4.59□□□□□ -1.67
CD44-239ENST00000639002 IFITM10A6NMD0 228 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3LB9A6J9 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 PPM1GO15355 546 aaPredicted RBP4.59□□□□□ -1.67
CD44-239ENST00000639002 SPRY3O43610 288 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 ASNA1O43681 348 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 CYP1A2P05177 515 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3HP0C7X1 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 FGF3P11487 239 aaPredicted RBP4.59□□□□□ -1.67
CD44-239ENST00000639002 SLC16A2P36021 539 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 PMS2P54278 862 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 CRYZQ08257 329 aaKnown RBP4.59□□□□□ -1.67
CD44-239ENST00000639002 SF3A3Q12874 501 aaKnown RBP eCLIP4.59□□□□□ -1.67
CD44-239ENST00000639002 NFATC4Q14934 902 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 DUSP6Q16828 381 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 BTBD16Q32M84 506 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 ALG10Q5BKT4 473 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 ALG10BQ5I7T1 473 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3GQ6DHY5 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3CQ6IPX1 549 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TMEM200AQ86VY9 491 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TBC1D3Q8IZP1 549 aaPredicted RBP4.59□□□□□ -1.67
CD44-239ENST00000639002 STYXQ8WUJ0 223 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 MUL1Q969V5 352 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 NPAS1Q99742 590 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 HIF1ANQ9NWT6 349 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 WNT16Q9UBV4 365 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 NFU1Q9UMS0 254 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 PKP3Q9Y446 797 aa4.59□□□□□ -1.67
CD44-239ENST00000639002 TCRBV7S3A2A0A539 114 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 AGAP5A6NIR3 686 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 OR6C75A6NL08 312 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 PAPSS2O95340 614 aaPredicted RBP4.58□□□□□ -1.68
CD44-239ENST00000639002 CHRNB2P17787 502 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 PCYT1AP49585 367 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 PDLIM4P50479 330 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 GPR18Q14330 331 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 ZNF569Q5MCW4 686 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 DCAF12L2Q5VW00 463 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 AAGABQ6PD74 315 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 KLBQ86Z14 1044 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 FAM217AQ8IXS0 508 aa4.58□□□□□ -1.68
CD44-239ENST00000639002 CADM3Q8N126 398 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms