RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CFAP57Q96MR6 1250 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 EDEM2Q9BV94 578 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 EDEM3Q9BZQ6 932 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 RSPH9Q9H1X1 276 aaPredicted RBP19.83■□□□□ 0.76
CLN3-260ENST00000637578 MYO6Q9UM54 1294 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 TBC1D30Q9Y2I9 924 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 A0A1W2PQJ5 194 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 LRRC53A6NM62 1247 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 DRGXA6NNA5 263 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 CDX4O14627 284 aaPredicted RBP19.82■□□□□ 0.76
CLN3-260ENST00000637578 CLDN11O75508 207 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 GYPCP04921 128 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 ACADMP11310 421 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 MZF1P28698 734 aaPredicted RBP19.82■□□□□ 0.76
CLN3-260ENST00000637578 RPS14P62263 151 aaKnown RBP19.82■□□□□ 0.76
CLN3-260ENST00000637578 TRIM61Q5EBN2 209 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 C9orf64Q5T6V5 341 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 OR52K2Q8NGK3 314 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 CEP76Q8TAP6 659 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 SIK2Q9H0K1 926 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 MTG2Q9H4K7 406 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 SLCO3A1Q9UIG8 710 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 OR51B4Q9Y5P0 310 aa19.82■□□□□ 0.76
CLN3-260ENST00000637578 IGLV3-10A0A075B6K4 115 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 TARSL2A2RTX5 802 aaKnown RBP19.81■□□□□ 0.76
CLN3-260ENST00000637578 PDGFRAP16234 1089 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 CDH4P55283 916 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 SULT2A1Q06520 285 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 DUOXA1Q1HG43 343 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 IRF2BP2Q7Z5L9 587 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 RABEPKQ7Z6M1 372 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 EMC1Q8N766 993 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 CPLX3Q8WVH0 158 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 DNASE2BQ8WZ79 361 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 IQCDQ96DY2 449 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 HAPLN3Q96S86 360 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 AGPAT1Q99943 283 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 C11orf70Q9BRQ4 267 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 FEM1AQ9BSK4 669 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 SYT11Q9BT88 431 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 CAPN10Q9HC96 672 aa19.81■□□□□ 0.76
CLN3-260ENST00000637578 METTL5Q9NRN9 209 aaKnown RBP19.81■□□□□ 0.76
CLN3-260ENST00000637578 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-260ENST00000637578 ATXN2Q99700 1313 aaKnown RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 CEP192Q8TEP8 1941 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 MED19A0JLT2 244 aaPredicted RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 C2CD4BA6NLJ0 364 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 SERPINF2P08697 491 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 RDXP35241 583 aaKnown RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 GGCXP38435 758 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 NSFP46459 744 aaKnown RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 ZNF177Q13360 481 aaPredicted RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 E4F1Q66K89 784 aaPredicted RBP19.8■□□□□ 0.76
CLN3-260ENST00000637578 MRFAP1L1Q96HT8 127 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 PPP1R9BQ96SB3 815 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 GPR174Q9BXC1 333 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 PCED1AQ9H1Q7 454 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 TMPRSS4Q9NRS4 437 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 ADAM22Q9P0K1 906 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 CAPN11Q9UMQ6 739 aa19.8■□□□□ 0.76
CLN3-260ENST00000637578 METTL12A8MUP2 240 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 TTC34A8MYJ7 566 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 SIN3BO75182 1162 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 CNTN5O94779 1100 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 CCDC172P0C7W6 258 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 FERP16591 822 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 CASP14P31944 242 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 PTPN9P43378 593 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 CCDC14Q49A88 953 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 SYCP2LQ5T4T6 812 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 ZNF776Q68DI1 518 aaPredicted RBP19.79■□□□□ 0.76
CLN3-260ENST00000637578 IL31Q6EBC2 164 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 MON1BQ7L1V2 547 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 RXFP2Q8WXD0 754 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 CENPIQ92674 756 aaPredicted RBP19.79■□□□□ 0.76
CLN3-260ENST00000637578 NUSAP1Q9BXS6 441 aaKnown RBP19.79■□□□□ 0.76
CLN3-260ENST00000637578 SCML1Q9UN30 329 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 SLC6A14Q9UN76 642 aa19.79■□□□□ 0.76
CLN3-260ENST00000637578 EDDM13A0A1B0GTR0 161 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 TCRBV5S1A1TA0A578 114 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 C4orf47A7E2U8 309 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 CALB1P05937 261 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 ZBED6P86452 979 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 TRIM14Q14142 442 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 ALFQ53S48 1182 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 WDR45BQ5MNZ6 344 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 SFMBT2Q5VUG0 894 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 TMC6Q7Z403 805 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 CACUL1Q86Y37 369 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 C3orf20Q8ND61 904 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 JOSD2Q8TAC2 188 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 FRS2Q8WU20 508 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 PTPRN2Q92932 1015 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 RPL10LQ96L21 214 aaKnown RBP19.78■□□□□ 0.76
CLN3-260ENST00000637578 FAM129BQ96TA1 746 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 TMEM9BQ9NQ34 198 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 ZNF212Q9UDV6 495 aa19.78■□□□□ 0.76
CLN3-260ENST00000637578 LUC7L2Q9Y383 392 aaKnown RBP19.78■□□□□ 0.76
CLN3-260ENST00000637578 SNX10Q9Y5X0 201 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms