RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 STON1Q9Y6Q2 735 aa18.81■□□□□ 0.6
CLN3-259ENST00000637551 CACNA1GO43497 2377 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 A0A1W2PQF6 199 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 FGF10O15520 208 aaPredicted RBP18.8■□□□□ 0.6
CLN3-259ENST00000637551 TMEM253P0C7T8 217 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 RHOQP17081 205 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 ATXN1P54253 815 aaKnown RBP18.8■□□□□ 0.6
CLN3-259ENST00000637551 SEMA3BQ13214 749 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 CAMK2GQ13555 558 aaPredicted RBP18.8■□□□□ 0.6
CLN3-259ENST00000637551 PTPRNQ16849 979 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 SPDYCQ5MJ68 293 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 ARTNQ5T4W7 220 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 EMC10Q5UCC4 262 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 SERPINA13PQ6UXR4 307 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 TMEM92Q6UXU6 159 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 CFAP52Q8N1V2 620 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 CCDC33Q8N5R6 958 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 GAB3Q8WWW8 586 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 EPAS1Q99814 870 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 C2orf49Q9BVC5 232 aaPredicted RBP18.8■□□□□ 0.6
CLN3-259ENST00000637551 THAP2Q9H0W7 228 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 LUC7LQ9NQ29 371 aaKnown RBP18.8■□□□□ 0.6
CLN3-259ENST00000637551 TMEM248Q9NWD8 314 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 SUN2Q9UH99 717 aa18.8■□□□□ 0.6
CLN3-259ENST00000637551 ZNF217O75362 1048 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 LCA5LO95447 670 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 GJB6O95452 261 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 CSKP41240 450 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 GALCP54803 685 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 ADKP55263 362 aaKnown RBP18.79■□□□□ 0.6
CLN3-259ENST00000637551 ST8SIA6P61647 398 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 OGDHQ02218 1023 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 ZBTB16Q05516 673 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 ZNF252P-AS1Q0IIN9 211 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 SH3PXD2AQ5TCZ1 1133 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 RHOT2Q8IXI1 618 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 DCAF4L2Q8NA75 395 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 TBC1D31Q96DN5 1066 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 ALG14Q96F25 216 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 LOXL4Q96JB6 756 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 HHIPQ96QV1 700 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 FEM1AQ9BSK4 669 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 INTS6Q9UL03 887 aaKnown RBP18.79■□□□□ 0.6
CLN3-259ENST00000637551 FZD10Q9ULW2 581 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 OR51B4Q9Y5P0 310 aa18.79■□□□□ 0.6
CLN3-259ENST00000637551 GPR179Q6PRD1 2367 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 NYNRINQ9P2P1 1898 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 TARSL2A2RTX5 802 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 WASH4PA8MWX3 477 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 MYO1FO00160 1098 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 ATMINO43313 823 aaPredicted RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 PRPSAP2O60256 369 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 SYNCRIPO60506 623 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 MTA2O94776 668 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 LRIG2O94898 1065 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 MAN1A1P33908 653 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 NNMTP40261 264 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 IL12RB1P42701 662 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 HCAR3P49019 387 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 CLCN6P51797 869 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 KRT83P78385 493 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 ECT2LQ008S8 904 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 GFPT1Q06210 699 aaPredicted RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 SLC20A2Q08357 652 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 USP39Q53GS9 565 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 BOLA3Q53S33 107 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 FSCBQ5H9T9 825 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 ERMARDQ5T6L9 678 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 TSSK4Q6SA08 328 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 PHLDB2Q86SQ0 1253 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 C14orf80Q86SX3 495 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 NLRP14Q86W24 1093 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 CCDC185Q8N715 623 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 MDGA1Q8NFP4 955 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 TEKT4Q8WW24 435 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 ZC3H10Q96K80 434 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 SPACA7Q96KW9 195 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 CALR3Q96L12 384 aaKnown RBP18.78■□□□□ 0.6
CLN3-259ENST00000637551 NUP85Q9BW27 656 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 CATSPERBQ9H7T0 1116 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 CACNA2D2Q9NY47 1150 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 NEU3Q9UQ49 428 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 HS3ST2Q9Y278 367 aa18.78■□□□□ 0.6
CLN3-259ENST00000637551 TCRBV21S2A2A0A5A6 115 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 GOLGA6L6A8MZA4 724 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 LRCH4O75427 683 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 OR1E1P30953 314 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 FNTBP49356 437 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 GEMIN4P57678 1058 aaKnown RBP18.77■□□□□ 0.6
CLN3-259ENST00000637551 HNRNPA1L2Q32P51 320 aaKnown RBP18.77■□□□□ 0.6
CLN3-259ENST00000637551 RNF219Q5W0B1 726 aaPredicted RBP18.77■□□□□ 0.6
CLN3-259ENST00000637551 SUMF1Q8NBK3 374 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 ZNF564Q8TBZ8 553 aaPredicted RBP18.77■□□□□ 0.6
CLN3-259ENST00000637551 MYO19Q96H55 970 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 ACOX2Q99424 681 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 MAGEH1Q9H213 219 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 SCML1Q9UN30 329 aa18.77■□□□□ 0.6
CLN3-259ENST00000637551 LRP3O75074 770 aa18.76■□□□□ 0.59
CLN3-259ENST00000637551 RPP40O75818 363 aaKnown RBP18.76■□□□□ 0.59
CLN3-259ENST00000637551 IGLV3-19P01714 112 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms