RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 KLHL42Q9P2K6 505 aa4.08□□□□□ -1.76
SCN1A-214ENST00000637038 MARCOQ9UEW3 520 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-214ENST00000637038 PRPF19Q9UMS4 504 aaKnown RBP4.08□□□□□ -1.76
SCN1A-214ENST00000637038 RAD54BQ9Y620 910 aa4.08□□□□□ -1.76
SCN1A-214ENST00000637038 PTPRJQ12913 1337 aa4.08□□□□□ -1.76
SCN1A-214ENST00000637038 A0A0A0MRY4 1105 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MAGEB16A2A368 324 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CCDC160A6NGH7 325 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C19orf67A6NJJ6 358 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C3orf70A6NLC5 250 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C2CD4BA6NLJ0 364 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PIK3R2O00459 728 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SLC22A2O15244 555 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 STAU1O95793 577 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LINGO3P0C6S8 592 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 UBTFL6P0CB48 400 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 STAG3L1P0CL83 205 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RALBP11234 206 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TCF4P15884 667 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SYN1P17600 705 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PTPRAP18433 802 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RBL1P28749 1068 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF135P52742 658 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 POU5F1BQ06416 359 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ILF2Q12905 390 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ITGA9Q13797 1035 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TTLL4Q14679 1199 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SHHQ15465 462 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 UGP2Q16851 508 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MSS51Q4VC12 460 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SEZ6Q53EL9 994 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RABGAP1LQ5R372 815 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ZBTB41Q5SVQ8 909 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 N4BP2L1Q5TBK1 243 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 METTL21CQ5VZV1 264 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PDPK2PQ6A1A2 396 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RFWD3Q6PCD5 774 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 UNC5AQ6ZN44 842 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ARMCX2Q7L311 632 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LCA5Q86VQ0 697 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 UNC93AQ86WB7 457 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PLD5Q8N7P1 536 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 OR6Y1Q8NGX8 325 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF483Q8TF39 744 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LZICQ8WZA0 190 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DLG3Q92796 817 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ZBTB10Q96DT7 871 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SPATA13Q96N96 652 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 QKIQ96PU8 341 aaKnown RBP eCLIP4.07□□□□□ -1.769e-7■■■■□ 21.4
SCN1A-214ENST00000637038 VRTNQ9H8Y1 702 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC40Q9H9A6 602 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 POPDC2Q9HBU9 364 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PCDH18Q9HCL0 1135 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 S100A14Q9HCY8 104 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 C6orf203Q9P0P8 240 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 KANSL3Q9P2N6 904 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SAE1Q9UBE0 346 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 AKT3Q9Y243 479 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ANKRD6Q9Y2G4 727 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DTNAQ9Y4J8 743 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ASB14A6NK59 587 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ERI2A8K979 691 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TLL1O43897 1013 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TBX10O75333 385 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CST3P01034 146 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CXCL8P10145 99 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CPA3P15088 417 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 IL1R2P27930 398 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TNFSF9P41273 254 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 PTPN9P43378 593 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RAP1GAPP47736 663 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 BCAT1P54687 386 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ART3Q13508 389 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 BMPR2Q13873 1038 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TMEM132BQ14DG7 1078 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TARBP2Q15633 366 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TRIP10Q15642 601 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CTC1Q2NKJ3 1217 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 HSF5Q4G112 596 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 BSPRYQ5W0U4 402 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MYLK4Q86YV6 388 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RIOX2Q8IUF8 465 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CCNYQ8ND76 341 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 UBA3Q8TBC4 463 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 RDH11Q8TC12 318 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MAML3Q96JK9 1138 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CLMNQ96JQ2 1002 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SPATA33Q96N06 139 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 MIPEPQ99797 713 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CDT1Q9H211 546 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CHCHD3Q9NX63 227 aaKnown RBP4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DPP3Q9NY33 737 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 ERAP1Q9NZ08 941 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 SEPT10Q9P0V9 454 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 VTI1BQ9UEU0 232 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 CD207Q9UJ71 328 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 TSPAN16Q9UKR8 245 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 AP4E1Q9UPM8 1137 aa4.07□□□□□ -1.76
SCN1A-214ENST00000637038 DERAQ9Y315 318 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms