RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 AP1B1Q10567 949 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 SLC45A4Q5BKX6 768 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 VARS2Q5ST30 1063 aaKnown RBP11.81□□□□□ -0.52
CLN6-217ENST00000636964 RELL1Q8IUW5 271 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 IGDCC3Q8IVU1 814 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 MPP4Q96JB8 637 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 ANKRD27Q96NW4 1050 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 CASD1Q96PB1 797 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 SIK2Q9H0K1 926 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 PAK5Q9P286 719 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 FBXW11Q9UKB1 542 aa11.81□□□□□ -0.52
CLN6-217ENST00000636964 H3BRJ5 948 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CCL5P13501 91 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 VAV1P15498 845 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ACADSP16219 412 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ZFXP17010 805 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 TARSP26639 723 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 CYP2C18P33260 490 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 PRMT2P55345 433 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 EFTUD2Q15029 972 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLN6-217ENST00000636964 MAPRE1Q15691 268 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 HEATR6Q6AI08 1181 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 PM20D1Q6GTS8 502 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 C4orf50Q6ZRC1 276 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 RFX8Q6ZV50 586 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 VSIG1Q86XK7 387 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 WDR75Q8IWA0 830 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 PDIK1LQ8N165 341 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 GBP7Q8N8V2 638 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 LSM14AQ8ND56 463 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 CKAP2Q8WWK9 683 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SEPT8Q92599 483 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SERPINB12Q96P63 405 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CCDC77Q9BR77 488 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CLUHO75153 1309 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CFAP69A5D8W1 941 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 MSI1O43347 362 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 FOXN2P32314 431 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 POLE2P56282 527 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SCN5AQ14524 2016 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 TMED2Q15363 201 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 MAP7D1Q3KQU3 841 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CTXN3Q4LDR2 81 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 C3orf62Q6ZUJ4 267 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 TMEM173Q86WV6 379 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 CDKL3Q8IVW4 592 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLN6-217ENST00000636964 DQX1Q8TE96 717 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 ZNF333Q96JL9 665 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 LRMDAQ9H2I8 198 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 PAK6Q9NQU5 681 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 HAO1Q9UJM8 370 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ADAM28Q9UKQ2 775 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SLC27A5Q9Y2P5 690 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 TBKBP1A7MCY6 615 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ALDH2P05091 517 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SRGAP2BP0DMP2 458 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ERCC2P18074 760 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 ELK3P41970 407 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 SLC11A1P49279 550 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 KLC1Q07866 573 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 KCNJ11Q14654 390 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CCNJLQ8IV13 435 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 PALM2Q8IXS6 379 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 DEPDC1BQ8WUY9 529 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 TFB1MQ8WVM0 346 aaKnown RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 HIPK3Q9H422 1215 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 DENND2DQ9H6A0 471 aaPredicted RBP11.8□□□□□ -0.52
CLN6-217ENST00000636964 KCNK9Q9NPC2 374 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 NMRK1Q9NWW6 199 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 PRELID1Q9Y255 219 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 CHKBQ9Y259 395 aa11.8□□□□□ -0.52
CLN6-217ENST00000636964 OAZ2O95190 189 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 SPATA31D3P0C874 917 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 EPHB2P29323 1055 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 SKIV2L2P42285 1042 aaKnown RBP11.79□□□□□ -0.52
CLN6-217ENST00000636964 NR2C2P49116 596 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 TPI1P60174 286 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 YWHAGP61981 247 aaKnown RBP eCLIP11.79□□□□□ -0.52
CLN6-217ENST00000636964 CUL3Q13618 768 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 STAT4Q14765 748 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 BTBD8Q5XKL5 378 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 MFSD5Q6N075 450 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 SPATA31D4Q6ZUB0 917 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 DENND5BQ6ZUT9 1274 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 SRRM1Q8IYB3 904 aaKnown RBP11.79□□□□□ -0.52
CLN6-217ENST00000636964 ANKRD42Q8N9B4 389 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 GABPB2Q8TAK5 448 aaPredicted RBP11.79□□□□□ -0.52
CLN6-217ENST00000636964 NUDCD1Q96RS6 583 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 LBHD1Q9BQE6 289 aaPredicted RBP11.79□□□□□ -0.52
CLN6-217ENST00000636964 PRDM12Q9H4Q4 367 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 NMUR1Q9HB89 426 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 OR12D3Q9UGF7 316 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 KLF15Q9UIH9 416 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 WDR37Q9Y2I8 494 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 COMMD10Q9Y6G5 202 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 ARHGEF37A1IGU5 675 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 ZNF487B1APH4 448 aa11.79□□□□□ -0.52
CLN6-217ENST00000636964 TNFRSF10BO14763 440 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms