RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 COL28A1Q2UY09 1125 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.67■□□□□ 0.26
CLN3-246ENST00000636228 BEND5Q7L4P6 421 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 PASD1Q8IV76 773 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 DEFB106AQ8N104 65 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 CCAR2Q8N163 923 aaKnown RBP16.67■□□□□ 0.26
CLN3-246ENST00000636228 ATP6V0D2Q8N8Y2 350 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 RNF34Q969K3 372 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 MED15Q96RN5 788 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 ELF4Q99607 663 aaPredicted RBP16.67■□□□□ 0.26
CLN3-246ENST00000636228 PRMT1Q99873 361 aaKnown RBP16.67■□□□□ 0.26
CLN3-246ENST00000636228 THAP9Q9H5L6 903 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 FAM204AQ9H8W3 233 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLN3-246ENST00000636228 ADAMTS1Q9UHI8 967 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 FREM2Q5SZK8 3169 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 ITIH6Q6UXX5 1313 aa16.67■□□□□ 0.26
CLN3-246ENST00000636228 ZFYVE26Q68DK2 2539 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3DA0A087WVF3 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3IA0A087WXS9 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3EA0A087X179 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3KA0A087X1G2 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 A0A1W2PR77 199 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3FA6NER0 549 aaPredicted RBP16.66■□□□□ 0.26
CLN3-246ENST00000636228 TRABD2BA6NFA1 517 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3LB9A6J9 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3HP0C7X1 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 GOT1P17174 413 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 CD38P28907 300 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 IRAK1P51617 712 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 ADPRHP54922 357 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 PPP2CBP62714 309 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 PPP2CAP67775 309 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 CENPCQ03188 943 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 SFSWAPQ12872 951 aaKnown RBP16.66■□□□□ 0.26
CLN3-246ENST00000636228 BECN1Q14457 450 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 POM121L1PQ3SYA9 428 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3GQ6DHY5 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 TBC1D3CQ6IPX1 549 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 FOXR2Q6PJQ5 311 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 SND1Q7KZF4 910 aaKnown RBP eCLIP16.66■□□□□ 0.261e-7■■■□□ 15.8
CLN3-246ENST00000636228 TBC1D3Q8IZP1 549 aaPredicted RBP16.66■□□□□ 0.26
CLN3-246ENST00000636228 OR52K2Q8NGK3 314 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 SERAC1Q96JX3 654 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 CPXM1Q96SM3 734 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 DDIT4Q9NX09 232 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 FTSJ1Q9UET6 329 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 SLC12A6Q9UHW9 1150 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 FZD4Q9ULV1 537 aa16.66■□□□□ 0.26
CLN3-246ENST00000636228 FAM208BQ5VWN6 2430 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 FAM170AA1A519 330 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 RTN2O75298 545 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 ADH1BP00325 375 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 ITGAVP06756 1048 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 C5AR1P21730 350 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 MAT2AP31153 395 aaKnown RBP16.65■□□□□ 0.26
CLN3-246ENST00000636228 DRD3P35462 400 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 CDK17Q00537 523 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 CAMK2BQ13554 666 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 FBXL22Q6P050 247 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 TRIM65Q6PJ69 517 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 FRS2Q8WU20 508 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 SLC2A13Q96QE2 648 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 TRIM62Q9BVG3 475 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 AJAP1Q9UKB5 411 aaPredicted RBP16.65■□□□□ 0.26
CLN3-246ENST00000636228 SARDHQ9UL12 918 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 CACNA1GO43497 2377 aa16.65■□□□□ 0.26
CLN3-246ENST00000636228 C10orf142B7Z368 130 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 ABCB4P21439 1286 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 NNMTP40261 264 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 CCR5P51681 352 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 BNIP3Q12983 259 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 DNAJC3Q13217 504 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 NME3Q13232 169 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 MEA1Q16626 185 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 ACCSLQ4AC99 568 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 OR6B2Q6IFH4 312 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 CXorf57Q6NSI4 855 aaKnown RBP16.64■□□□□ 0.25
CLN3-246ENST00000636228 FAM183BPQ6ZVS7 135 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 ENOSF1Q7L5Y1 443 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 C14orf80Q86SX3 495 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 GALNT15Q8N3T1 639 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 EID2Q8N6I1 236 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 SKA1Q96BD8 255 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 PPP1R13BQ96KQ4 1090 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 RPRD1AQ96P16 312 aaPredicted RBP16.64■□□□□ 0.25
CLN3-246ENST00000636228 VANGL2Q9ULK5 521 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 HS3ST4Q9Y661 456 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 DSPP15924 2871 aaKnown RBP16.64■□□□□ 0.25
CLN3-246ENST00000636228 PLXNB3Q9ULL4 1909 aa16.64■□□□□ 0.25
CLN3-246ENST00000636228 TLR4O00206 839 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 ENC1O14682 589 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 BNIP3LO60238 219 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 DFNA5O60443 496 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 LDOC1O95751 146 aaPredicted RBP16.63■□□□□ 0.25
CLN3-246ENST00000636228 ERBB2P04626 1255 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 PNMA6AP0CW24 399 aaPredicted RBP16.63■□□□□ 0.25
CLN3-246ENST00000636228 CCR1P32246 355 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 SLC12A1Q13621 1099 aa16.63■□□□□ 0.25
CLN3-246ENST00000636228 AUHQ13825 339 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms