RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SIX6OS1Q8N1H7 587 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 GATA6Q92908 595 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 PGAP3Q96FM1 320 aaPredicted RBP13.06□□□□□ -0.32
LINC00540-203ENST00000631321 LBHD1Q9BQE6 289 aaPredicted RBP13.06□□□□□ -0.32
LINC00540-203ENST00000631321 VCXQ9H320 206 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 IL1RAPL1Q9NZN1 696 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 BFARQ9NZS9 450 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 SBF1O95248 1867 aa13.06□□□□□ -0.32
LINC00540-203ENST00000631321 MEI4A8MW99 385 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 KCNK1O00180 336 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 MTSS1O43312 755 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CRABP2P29373 138 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 NUMBP49757 651 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 SLC25A3Q00325 362 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 NME3Q13232 169 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ITGA9Q13797 1035 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 OR52E8Q6IFG1 317 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 GPR142Q7Z601 462 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 STRA8Q7Z7C7 330 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CMC1Q7Z7K0 106 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 DPP9Q86TI2 863 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ARRDC4Q8NCT1 418 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ACTRT2Q8TDY3 377 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ZNF669Q96BR6 464 aaPredicted RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CMTM5Q96DZ9 223 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 GBA3Q9H227 469 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 NDE1Q9NXR1 346 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 FBXW11Q9UKB1 542 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 TRHDEQ9UKU6 1024 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CDY2AQ9Y6F7 541 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CDY1Q9Y6F8 540 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 SYNJ2BP-COX16A0A087WUM0 186 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 MAGEB16A2A368 324 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 TMEM114B3SHH9 223 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 G3V2L1 256 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 I6L893 689 aaPredicted RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 NRP1O14786 923 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 H2AFYO75367 372 aaKnown RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CD68P34810 354 aaPredicted RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CSRP3P50461 194 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 TKTL1P51854 596 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CSE1LP55060 971 aaKnown RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 OLIG2Q13516 323 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 KIAA0319Q5VV43 1072 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 PDPK2PQ6A1A2 396 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 FSTL4Q6MZW2 842 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 EPGNQ6UW88 154 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 PLD6Q8N2A8 252 aaKnown RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 SMG8Q8ND04 991 aaKnown RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 SLC7A14Q8TBB6 771 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 SLC10A4Q96EP9 437 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 IFT43Q96FT9 208 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 NR1H4Q96RI1 486 aaPredicted RBP13.05□□□□□ -0.32
LINC00540-203ENST00000631321 CDH19Q9H159 772 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 S100A14Q9HCY8 104 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ANLNQ9NQW6 1124 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ZNF358Q9NW07 568 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 COX16Q9P0S2 106 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 PPM1HQ9ULR3 514 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 IPPQ9Y573 584 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 ASB3Q9Y575 518 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 TSC2P49815 1807 aa13.05□□□□□ -0.32
LINC00540-203ENST00000631321 BTBD19C9JJ37 291 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 FAM200BP0CF97 657 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 NPY2RP49146 381 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 ZNF135P52742 658 aaPredicted RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 DAOAP59103 153 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 WSCD1Q658N2 575 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 GSTCDQ8NEC7 633 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 DNAJB3Q8WWF6 145 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 HDAC11Q96DB2 347 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 MS4A4AQ96JQ5 239 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 MLPHQ9BV36 600 aaPredicted RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 RNF181Q9P0P0 153 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 SCOCQ9UIL1 159 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 MAGEA13PA6NCF6 341 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 ZBTB24O43167 697 aaPredicted RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 TIMM44O43615 452 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 BUD23O43709 281 aaKnown RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 ACAT1P24752 427 aaKnown RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 CCNHP51946 323 aaPredicted RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 TPI1P60174 286 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 GALNT2Q10471 571 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 RAB41Q5JT25 222 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 METTL21CQ5VZV1 264 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 RSPH3Q86UC2 560 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 KLHDC8BQ8IXV7 354 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 NPWQ8N729 165 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 POU5F2Q8N7G0 328 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 DPF3Q92784 378 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 PPP1R10Q96QC0 940 aaKnown RBP13.04□□□□□ -0.32
LINC00540-203ENST00000631321 AGAP2Q99490 1192 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 VAT1Q99536 393 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 ULBP1Q9BZM6 244 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 CNGB3Q9NQW8 809 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 DLGAP2Q9P1A6 1054 aa13.04□□□□□ -0.32
LINC00540-203ENST00000631321 A0A096LPK6 155 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 PTGESO14684 152 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 AMHP03971 560 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 GMPRP36959 345 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms