RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 IGLV3-27P01718 113 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 SPATA31D3P0C874 917 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 RARGP13631 454 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ITIH2P19823 946 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 CCR1P32246 355 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ELF1P32519 619 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ADCY8P40145 1251 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 HCAR3P49019 387 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 NR2C2P49116 596 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ITGA8P53708 1063 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 PPP2R5DQ14738 602 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 PAFAH1B3Q15102 231 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ZNF528Q3MIS6 628 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 HIBCHQ6NVY1 386 aaPredicted RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 SPATA31D4Q6ZUB0 917 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 C1orf210Q8IVY1 113 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 IQCKQ8N0W5 287 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 FAM71DQ8N9W8 422 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 BBOF1Q8ND07 529 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 RTP4Q96DX8 246 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 PWWP2AQ96N64 755 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 EPAS1Q99814 870 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 KLC2Q9H0B6 622 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 ACBD3Q9H3P7 528 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 CCSER2Q9H7U1 834 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 VIPAS39Q9H9C1 493 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 CYP4F11Q9HBI6 524 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 PCDH9Q9HC56 1237 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 OLA1Q9NTK5 396 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 MTRF1LQ9UGC7 380 aaKnown RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 OR12D3Q9UGF7 316 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 CDH7Q9ULB5 785 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 MAGED2Q9UNF1 606 aaPredicted RBP9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 SPTBN4Q9H254 2564 aa9.78□□□□□ -0.84
PDLIM5-223ENST00000627587 NOTCH4Q99466 2003 aa9.77□□□□□ -0.84
PDLIM5-223ENST00000627587 BCLAF3A2AJT9 711 aaKnown RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 H3BQF6 201 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 H7C0C1 242 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 PAGE1O75459 146 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 IFNB1P01574 187 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 SP9P0CG40 484 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 CSH1P0DML2 217 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 CSH2P0DML3 217 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 VAV1P15498 845 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 ERCC2P18074 760 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 SDHBP21912 280 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 RBL1P28749 1068 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 HOXC13P31276 330 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 STIP1P31948 543 aaKnown RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 RPL22P35268 128 aaKnown RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 CHKAP35790 457 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 ALDH1A3P47895 512 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 ATP5OP48047 213 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 TPI1P60174 286 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 PFKPQ01813 784 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 P3H1Q32P28 736 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 PPM1LQ5SGD2 360 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 SNX30Q5VWJ9 437 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 DARS2Q6PI48 645 aaKnown RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 BZW1Q7L1Q6 419 aaKnown RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 GET4Q7L5D6 327 aaPredicted RBP9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 TMEM150AQ86TG1 271 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 TCEAL8Q8IYN2 117 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 ZNF683Q8IZ20 524 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 PDZD8Q8NEN9 1154 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 LRRC45Q96CN5 670 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 MYRFLQ96LU7 910 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 HAPLN3Q96S86 360 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 NELL2Q99435 816 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 OSBPL2Q9H1P3 480 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 DLGAP2Q9P1A6 1054 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 FBXO4Q9UKT5 387 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 TLR6Q9Y2C9 796 aa9.77□□□□□ -0.85
PDLIM5-223ENST00000627587 CFAP69A5D8W1 941 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 DNALI1O14645 258 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 PRRG1O14668 218 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 NDC80O14777 642 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 NCAM2O15394 837 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 SLC2A3P11169 496 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 HSD17B3P37058 310 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 CAV1Q03135 178 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 GAD2Q05329 585 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 EFEMP1Q12805 493 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 GPS1Q13098 491 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 PUM1Q14671 1186 aaKnown RBP eCLIP9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 VEPH1Q14D04 833 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 TAF12Q16514 161 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 RNASEH2BQ5TBB1 312 aaKnown RBP9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 PIK3R6Q5UE93 754 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 IZUMO3Q5VZ72 239 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 C14orf80Q86SX3 495 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 PJA1Q8NG27 643 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 OVCA2Q8WZ82 227 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 QKIQ96PU8 341 aaKnown RBP eCLIP9.76□□□□□ -0.852e-9■■■■■ 73.6
PDLIM5-223ENST00000627587 CDK5RAP1Q96SZ6 601 aaKnown RBP9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 LRRC4CQ9HCJ2 640 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 MAFFQ9ULX9 164 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 HS3ST4Q9Y661 456 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 NFS1Q9Y697 457 aa9.76□□□□□ -0.85
PDLIM5-223ENST00000627587 NUMBLQ9Y6R0 609 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms