RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CA3P07451 260 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 INHBAP08476 426 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PTPN9P43378 593 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 GJA8P48165 433 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 LMNB2Q03252 620 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 DNAJC3Q13217 504 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CTBP1Q13363 440 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PPP2R5EQ16537 467 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 QPCTQ16769 361 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 NUGGCQ68CJ6 796 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CMC1Q7Z7K0 106 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 BLOC1S5Q8TDH9 187 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 DDI1Q8WTU0 396 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 FSD1LQ9BXM9 530 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 TSPYL1Q9H0U9 437 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 HOMER3Q9NSC5 361 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PCMTD2Q9NV79 361 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 TBX21Q9UL17 535 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 FAM169AQ9Y6X4 670 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 TNFRSF10BO14763 440 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 COCHO43405 550 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 KLKB1P03952 638 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PRSS56P0CW18 603 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CORO1AP31146 461 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 GBP1P32455 592 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CD86P42081 329 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CSE1LP55060 971 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 FAM189BP81408 668 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 ENPEPQ07075 957 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 MAPRE1Q15691 268 aaKnown RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 MON1AQ86VX9 555 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CNTD1Q8N815 330 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 STK32AQ8WU08 396 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 EXT2Q93063 718 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 PAFAH2Q99487 392 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 FICDQ9BVA6 458 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 ZCWPW1Q9H0M4 648 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 WHRNQ9P202 907 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 SLC2A6Q9UGQ3 507 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 CCL26Q9Y258 94 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 MTF2Q9Y483 593 aaPredicted RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 PCDHGC4Q9Y5F7 938 aa10.79□□□□□ -0.68
VPS11-208ENST00000621676 ZFP37Q9Y6Q3 630 aaPredicted RBP10.79□□□□□ -0.68
VPS11-208ENST00000621676 PITPNM1O00562 1244 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 INPPL1O15357 1258 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 CCNB1P14635 433 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 STX2P32856 288 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ZXDBP98169 803 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 PDE1BQ01064 536 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 IFT88Q13099 833 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 LRRC31Q6UY01 552 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 NAPRTQ6XQN6 538 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ANKS3Q6ZW76 656 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 STRADAQ7RTN6 431 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 HOMEZQ8IX15 550 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TMEM199Q8N511 208 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 FIBCD1Q8N539 461 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 SLC43A3Q8NBI5 491 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 SORCS1Q8WY21 1168 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 CCDC77Q9BR77 488 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 VPS11Q9H270 941 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TLR8Q9NR97 1041 aaKnown RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 CLEC4EQ9ULY5 219 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 OAZ2O95190 189 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 MT-CO1P00395 513 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 PYGBP11216 843 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ATP2A2P16615 1042 aaKnown RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 RPA3P35244 121 aaPredicted RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 GLUD2P49448 558 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 PPP2R2AP63151 447 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 WASHC5Q12768 1159 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ANO4Q32M45 955 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 FAM26DQ5JW98 314 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 PTAR1Q7Z6K3 402 aaPredicted RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 CAND1Q86VP6 1230 aaKnown RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 POF1BQ8WVV4 589 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 KCNN1Q92952 543 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 NKD2Q969F2 451 aaPredicted RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 ZNF670Q9BS34 389 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 CWH43Q9H720 699 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ZNF334Q9HCZ1 680 aaPredicted RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 FGFR1OP2Q9NVK5 253 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 SAMD15Q9P1V8 674 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 SLC17A7Q9P2U7 560 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 SLC4A7Q9Y6M7 1214 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 URB1O60287 2271 aaKnown RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 KCNU1A8MYU2 1149 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TCP11X1B4DZS4 312 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TRIM49D1C9J1S8 452 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 TGM5O43548 720 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ATXN8OSP0DMR3 200 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 PTPN3P26045 913 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 LSP1P33241 339 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 ATP5C1P36542 298 aaKnown RBP10.78□□□□□ -0.68
VPS11-208ENST00000621676 GPR17Q13304 367 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 FSCBQ5H9T9 825 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 MS4A13Q5J8X5 152 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 DNAJC5GQ8N7S2 189 aa10.78□□□□□ -0.68
VPS11-208ENST00000621676 NAT8LQ8N9F0 302 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms