RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 FIGNQ5HY92 759 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 BNIPLQ7Z465 357 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 C14orf80Q86SX3 495 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 TMEM245Q9H330 911 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 HAUS4Q9H6D7 363 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 CD93Q9NPY3 652 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 TAS2R14Q9NYV8 317 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 KIAA1522Q9P206 1035 aaPredicted RBP16.48■□□□□ 0.23
BRCA1-228ENST00000618469 CYP8B1Q9UNU6 501 aa16.48■□□□□ 0.23
BRCA1-228ENST00000618469 TNRC6BQ9UPQ9 1833 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 BCLAF3A2AJT9 711 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 TMCO5BA8MYB1 307 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 MAP3K13O43283 966 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 ASLP04424 464 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 PBX1P40424 430 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 PTPN9P43378 593 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 KLHL30Q0D2K2 578 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 PLEKHG6Q3KR16 790 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 CCDC14Q49A88 953 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 RAB6CQ53S08 254 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 DAB2IPQ5VWQ8 1189 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 CXorf57Q6NSI4 855 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 ARMCX6Q7L4S7 300 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 DEFB124Q8NES8 71 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 ZCCHC14Q8WYQ9 949 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 TTC17Q96AE7 1141 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 MCEEQ96PE7 176 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 NUP58Q9BVL2 599 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 EDEM3Q9BZQ6 932 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 MKRN2Q9H000 416 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 RAB6CQ9H0N0 254 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 PRDM16Q9HAZ2 1276 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 TMEM51Q9NW97 253 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 AIPL1Q9NZN9 384 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 MBD1Q9UIS9 605 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 LHX6Q9UPM6 363 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 ASCC3Q8N3C0 2202 aaKnown RBP16.47■□□□□ 0.23
BRCA1-228ENST00000618469 WDFY3Q8IZQ1 3526 aa16.47■□□□□ 0.23
BRCA1-228ENST00000618469 IGHV1OR15-9A0A0B4J2B8 117 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ATMINO43313 823 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ZNF217O75362 1048 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 GPD1P21695 349 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 RRM1P23921 792 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 PRKCIP41743 596 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 CTSOP43234 321 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 DHPSP49366 369 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 COPAP53621 1224 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ST8SIA6P61647 398 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 TDRD12Q587J7 1177 aaKnown RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 RNF219Q5W0B1 726 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ACAD10Q6JQN1 1059 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 PPP1R2P3Q6NXS1 205 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 LRSAM1Q6UWE0 723 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 LPCAT2Q7L5N7 544 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ZNF571Q7Z3V5 609 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-228ENST00000618469 TMPRSS6Q8IU80 811 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 MCOLN2Q8IZK6 566 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 APCDD1Q8J025 514 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 RNF214Q8ND24 703 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 FAM172AQ8WUF8 416 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 GATA6Q92908 595 aa16.46■□□□□ 0.23
BRCA1-228ENST00000618469 ADAMTS9Q9P2N4 1935 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 A0A1W2PQJ5 194 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 TCRBV5S1A1TA0A578 114 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ANKRD62A6NC57 917 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 E9PAM4 449 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 HYAL3O43820 417 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CLDN11O75508 207 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CNTN5O94779 1100 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 TPM3P06753 285 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 SKILP12757 684 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 MZF1P28698 734 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 RFC1P35251 1148 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 RPL6Q02878 288 aaKnown RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF177Q13360 481 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CAMK2GQ13555 558 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 SLC12A1Q13621 1099 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ALFQ53S48 1182 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 LRRC31Q6UY01 552 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 STRADAQ7RTN6 431 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CYP2U1Q7Z449 544 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 TMEFF1Q8IYR6 380 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF683Q8IZ20 524 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 OR2T3Q8NH03 318 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CPLX3Q8WVH0 158 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 PRCCQ92733 491 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 SIPA1Q96FS4 1042 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 MYO19Q96H55 970 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 MRGPRX3Q96LB0 322 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 XPO4Q9C0E2 1151 aaKnown RBP16.45■□□□□ 0.22
BRCA1-228ENST00000618469 MTG2Q9H4K7 406 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 ERVW-1Q9UQF0 538 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 CEP192Q8TEP8 1941 aa16.45■□□□□ 0.22
BRCA1-228ENST00000618469 SIGLEC16A6NMB1 481 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 CDX4O14627 284 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-228ENST00000618469 CCP110O43303 1012 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 ENDOD1O94919 500 aa16.44■□□□□ 0.22
BRCA1-228ENST00000618469 STK19P49842 368 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms