RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TRAFD1O14545 582 aaPredicted RBP14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 CPB1P15086 417 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 NPR3P17342 541 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 GRIK1P39086 918 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 CRYBB1P53674 252 aaPredicted RBP14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 PDE1BQ01064 536 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 CLEC20AQ6ZU45 233 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 PTCD3Q96EY7 689 aaKnown RBP14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 SHCBP1LQ9BZQ2 653 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ZNF212Q9UDV6 495 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 KIAA1257Q9ULG3 409 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 FARP1Q9Y4F1 1045 aaPredicted RBP14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ACTL7BQ9Y614 415 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 MGAMO43451 1857 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ATP6V1G1O75348 118 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 CHRNA1P02708 482 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ERVK-10P10266 1014 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 EFCAB3Q8N7B9 438 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 BHMTQ93088 406 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 TLE6Q9H808 572 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 RNF103O00237 685 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 COPEO14579 308 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 GABRB2P47870 512 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 BTKQ06187 659 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 RASA2Q15283 850 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ZBTB6Q15916 424 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 CDHR3Q6ZTQ4 885 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 RNF139Q8WU17 664 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 PLEKHA5Q9HAU0 1116 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 ANLNQ9NQW6 1124 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 PAK5Q9P286 719 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 SLC4A7Q9Y6M7 1214 aa14.83□□□□□ -0.04
SHROOM1-208ENST00000617339 SDK1Q7Z5N4 2213 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 RGPD3A6NKT7 1758 aaPredicted RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 RGPD4Q7Z3J3 1758 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 RBM47A0AV96 593 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 TCEA3O75764 348 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 EPHB1P54762 984 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 ALDH18A1P54886 795 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 MCCD1P59942 119 aaPredicted RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 POU5F1BQ06416 359 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 CDC16Q13042 620 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 MARK2Q7KZI7 788 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 NDUFAF2Q8N183 169 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 TFB1MQ8WVM0 346 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 SMYD2Q9NRG4 433 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 TXNDC16Q9P2K2 825 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 PRPF4O43172 522 aaKnown RBP eCLIP14.82□□□□□ -0.042e-6■□□□□ 9
SHROOM1-208ENST00000617339 TADA2AO75478 443 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 MRPS6P82932 125 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 EFHC2Q5JST6 749 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 HTR3CQ8WXA8 447 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 P2RY11Q96G91 374 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 RNF208Q9H0X6 261 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 RANBP2P49792 3224 aaKnown RBP14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 CDH23Q9H251 3354 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 KNL1Q8NG31 2342 aa14.82□□□□□ -0.04
SHROOM1-208ENST00000617339 MDM4O15151 490 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 JCHAINP01591 159 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CDK7P50613 346 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 TPI1P60174 286 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 KYAT1Q16773 422 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 GLB1LQ6UWU2 654 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 PAQR9Q6ZVX9 377 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 SCUBE1Q8IWY4 988 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 ARHGAP18Q8N392 663 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 LRRC52Q8N7C0 313 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 RILPQ96NA2 401 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 DUSP16Q9BY84 665 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 VPS11Q9H270 941 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CNTN3Q9P232 1028 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 COL1A2P08123 1366 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 TTC24A2A3L6 582 aaPredicted RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 MGEA5O60502 916 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 VAV1P15498 845 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 MRPS5P82675 430 aaKnown RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 MAP7Q14244 749 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 PPM1JQ5JR12 505 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 MORN1Q5T089 497 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 ACBD5Q5T8D3 534 aaPredicted RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 AGMOQ6ZNB7 445 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CAND1Q86VP6 1230 aaKnown RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 RBM15BQ8NDT2 890 aaKnown RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 OR52K1Q8NGK4 314 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CEP70Q8NHQ1 597 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 EMID1Q96A84 441 aaPredicted RBP14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 TKTL2Q9H0I9 626 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 TRPV6Q9H1D0 765 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 ARHGEF4Q9NR80 690 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 EURLQ9NYK6 297 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 PHF24Q9UPV7 400 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 OTOFQ9HC10 1997 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CSH1P0DML2 217 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CSH2P0DML3 217 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 ERCC2P18074 760 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 MATKP42679 507 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 TMPRSS15P98073 1019 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 CDK16Q00536 496 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 PDK2Q15119 407 aa14.81□□□□□ -0.04
SHROOM1-208ENST00000617339 UNC5AQ6ZN44 842 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms