RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 KRT36O76013 467 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 CYP1A1P04798 512 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-212ENST00000616140 ALDH2P05091 517 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 GJB1P08034 283 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 PTPN1P18031 435 aaKnown RBP14.27□□□□□ -0.13
CPSF1-212ENST00000616140 MAPK1P28482 360 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 TMEM132BQ14DG7 1078 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 PREPLQ4J6C6 727 aaPredicted RBP14.27□□□□□ -0.13
CPSF1-212ENST00000616140 RETSATQ6NUM9 610 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 C12orf29Q8N999 325 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 FIG4Q92562 907 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 CDCA5Q96FF9 252 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 LGMNQ99538 433 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 BDH2Q9BUT1 245 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 ELOVL4Q9GZR5 314 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 FAM50BQ9Y247 325 aa14.27□□□□□ -0.13
CPSF1-212ENST00000616140 B4GALT5O43286 388 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 GRIN3BO60391 1043 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC159P0C7I6 412 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 CCT8P50990 548 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 NCKAP1LP55160 1127 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 MAP1SQ66K74 1059 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 ACO2Q99798 780 aaKnown RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 TBL1YQ9BQ87 522 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 MAN1C1Q9NR34 630 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 USE1Q9NZ43 259 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 TCRBV7S2A1N4TA0A589 114 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 MAFO75444 373 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 SNHG28P0DPA3 235 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 IL5RAQ01344 420 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 NAB1Q13506 487 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF284Q2VY69 593 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 FAM98BQ52LJ0 330 aaKnown RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 RASGEF1CQ8N431 466 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 JOSD2Q8TAC2 188 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 ZNF398Q8TD17 642 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 CASP10Q92851 521 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 VPS33AQ96AX1 596 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 EBNA1BP2Q99848 306 aaKnown RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 SH3GL2Q99962 352 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 WDR41Q9HAD4 459 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 ENTPD7Q9NQZ7 604 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 SELENONQ9NZV5 590 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 BTN3A1O00481 513 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 BUD23O43709 281 aaKnown RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 LZTS3O60299 673 aaPredicted RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 EGFRP00533 1210 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 ATP5BP06576 529 aaKnown RBP14.26□□□□□ -0.13
CPSF1-212ENST00000616140 MMP8P22894 467 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 MFSD10Q14728 455 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 CATSPERGQ6ZRH7 1159 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 C12orf56Q8IXR9 622 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 PHF21AQ96BD5 680 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 SEMA6AQ9H2E6 1030 aa14.26□□□□□ -0.13
CPSF1-212ENST00000616140 TMEM191CA6NGB0 347 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PSMD12O00232 456 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 EDF1O60869 148 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 NPR3P17342 541 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 DGKZQ13574 1117 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 NRF1Q16656 503 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 CELF3Q5SZQ8 465 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 GJC2Q5T442 439 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PCSK9Q8NBP7 692 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 MFSD14AQ96MC6 490 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 CIPCQ9C0C6 399 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TTYH3Q9C0H2 523 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 MTFR1LQ9H019 292 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 COMMD8Q9NX08 183 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 SORCS3Q9UPU3 1222 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TMEM114B3SHH9 223 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 GOT1P17174 413 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 VGLL4Q14135 290 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 FRG1Q14331 258 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC142Q17RM4 750 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 FAM171A1Q5VUB5 890 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TATDN1Q6P1N9 297 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 NETO2Q8NC67 525 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 LRRC4CQ9HCJ2 640 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 GIMAP4Q9NUV9 329 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TMCC3Q9ULS5 477 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PLA2G4CQ9UP65 541 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 ANKRD6Q9Y2G4 727 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TTLL13PA6NNM8 815 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 DCDC2CA8MYV0 355 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 NFKB1P19838 968 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 YWHAQP27348 245 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 WEE1P30291 646 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 AXLP30530 894 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 SLC16A1P53985 500 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PPIDQ08752 370 aaKnown RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 NEDD8Q15843 81 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 BNIPLQ7Z465 357 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 TNS4Q8IZW8 715 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PGBD3Q8N328 593 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 OSCP1Q8WVF1 389 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 ACE2Q9BYF1 805 aaPredicted RBP14.25□□□□□ -0.13
CPSF1-212ENST00000616140 LIMD1Q9UGP4 676 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 PEX1O43933 1283 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 RTP1P59025 263 aa14.25□□□□□ -0.13
CPSF1-212ENST00000616140 ELAVL2Q12926 359 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms