RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 NR4A1P22736 598 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 PRKCHP24723 683 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 EIF2B2P49770 351 aaKnown RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 CSE1LP55060 971 aaKnown RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 ANO4Q32M45 955 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 STRIP1Q5VSL9 837 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SLFN12LQ6IEE8 588 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 FAM183BPQ6ZVS7 135 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 STRA8Q7Z7C7 330 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 CMASQ8NFW8 434 aaPredicted RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 FAM110BQ8TC76 370 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SNRNP25Q9BV90 132 aaKnown RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 TMPRSS4Q9NRS4 437 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 GTSE1Q9NYZ3 720 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 GINS2Q9Y248 185 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 C7orf72A4D263 438 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 BIRC5O15392 142 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 LSM8O95777 96 aaKnown RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 GSRP00390 522 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 C1QAP02745 245 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 CYP2F1P24903 491 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 EPHX2P34913 555 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 GNL1P36915 607 aaPredicted RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 DPP6P42658 865 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 BTG3Q14201 252 aaPredicted RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 PTK2BQ14289 1009 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 LDLRAP1Q5SW96 308 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 LRRC8EQ6NSJ5 796 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 KDELC2Q7Z4H8 507 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 TRAPPC12Q8WVT3 735 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SLC29A1Q99808 456 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SNX15Q9NRS6 342 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SYBUQ9NX95 663 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 STK39Q9UEW8 545 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 CEPT1Q9Y6K0 416 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 A6NL46 340 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 PDLIM1O00151 329 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 LYPLA2O95372 231 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 ME2P23368 584 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 HALP42357 657 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 EMP3P54852 163 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 ZNF460Q14592 562 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 FAM91A1Q658Y4 838 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 SNRNP48Q6IEG0 339 aaKnown RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 ACVR1CQ8NER5 493 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 DHRS1Q96LJ7 313 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 CEP295NLQ96MC4 621 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 CCDC167Q9P0B6 97 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 C6orf203Q9P0P8 240 aaPredicted RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 RGS17Q9UGC6 210 aaPredicted RBP13.45□□□□□ -0.26
MSH6-214ENST00000616033 TBC1D30Q9Y2I9 924 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 PCDHA11Q9Y5I1 949 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 GJA3Q9Y6H8 435 aa13.45□□□□□ -0.26
MSH6-214ENST00000616033 A0A096LPK6 155 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 TRDMT1O14717 391 aaKnown RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 TSPAN8P19075 237 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 YAP1P46937 504 aaKnown RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 SERPINB9P50453 376 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 PDAP1Q13442 181 aaKnown RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 NEDD8Q15843 81 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 CARTPTQ16568 116 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 GPR107Q5VW38 600 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 POTEHQ6S545 545 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 COLGALT1Q8NBJ5 622 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 CYGBQ8WWM9 190 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 RPL10LQ96L21 214 aaKnown RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 FERMT1Q9BQL6 677 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 TRIM8Q9BZR9 551 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 KCNU1A8MYU2 1149 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 MT-ND1P03886 318 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 SDC4P31431 198 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 PTPN11Q06124 597 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 OFCC1Q8IZS5 231 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 PNPLA1Q8N8W4 532 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 NDRG1Q92597 394 aaKnown RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 GATA5Q9BWX5 397 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 CDH19Q9H159 772 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 SOX17Q9H6I2 414 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 CYP4F12Q9HCS2 524 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 ZNF302Q9NR11 478 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 FAM159BA6NKW6 160 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 ZNF839A8K0R7 811 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 NUMBP49757 651 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 CAPSQ13938 189 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 ZNF362Q5T0B9 420 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 C16orf89Q6UX73 402 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 IFNEQ86WN2 208 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 TP53INP2Q8IXH6 220 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 NUP93Q8N1F7 819 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 RMND5BQ96G75 393 aaPredicted RBP13.44□□□□□ -0.26
MSH6-214ENST00000616033 ANKRD36BP1Q96IX9 119 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 PCDH18Q9HCL0 1135 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 THEGQ9P2T0 379 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 DCDC2Q9UHG0 476 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 TRIM17Q9Y577 477 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 CDY2AQ9Y6F7 541 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 CDY1Q9Y6F8 540 aa13.44□□□□□ -0.26
MSH6-214ENST00000616033 ATP6AP2A0A1C7CYW4 349 aa13.43□□□□□ -0.26
MSH6-214ENST00000616033 NRP1O14786 923 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms