RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TBC1D3LB9A6J9 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 E7ENQ6 273 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 C1QTNF3-AMACRE9PGA6 284 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 PRAMEF26H0Y7S4 382 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 J3QKU1 62 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 MID1O15344 667 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ACTN4O43707 911 aaKnown RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 SIN3BO75182 1162 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 F13A1P00488 732 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 IL1BP01584 269 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 IGLV3-27P01718 113 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 LTFP02788 710 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 GP1BAP07359 652 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3HP0C7X1 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TRIM49P0CI25 452 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TRIM49CP0CI26 452 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 CD70P32970 193 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 CSKP41240 450 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 SYKP43405 635 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ACADSBP45954 432 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 DAOAP59103 153 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ERVPABLB-1P60509 514 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 DAB2P98082 770 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ECT2LQ008S8 904 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 CFHR1Q03591 330 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ZNF211Q13398 564 aaPredicted RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 NUMA1Q14980 2115 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 PKDCCQ504Y2 493 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TAF1BQ53T94 588 aaPredicted RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 RABGAP1LQ5R372 815 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 C1orf220Q5T0J3 134 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 ACBD5Q5T8D3 534 aaPredicted RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 SFMBT2Q5VUG0 894 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3GQ6DHY5 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3CQ6IPX1 549 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 LCLAT1Q6UWP7 414 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 XKR5Q6UX68 686 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TBC1D3Q8IZP1 549 aaPredicted RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 OR14C36Q8NHC7 312 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TPCN2Q8NHX9 752 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 OR8D1Q8WZ84 308 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 EDEM1Q92611 657 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 RNF34Q969K3 372 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 IFT43Q96FT9 208 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 BTN2A3PQ96KV6 586 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 DEPDC7Q96QD5 511 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 DUSP23Q9BVJ7 150 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 DPH1Q9BZG8 443 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 NEUROG2Q9H2A3 272 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 MMRN2Q9H8L6 949 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 METTL14Q9HCE5 456 aaKnown RBP6.51□□□□□ -1.37
CUX1-220ENST00000607092 PREBQ9HCU5 417 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 THSD1Q9NS62 852 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 RCOR1Q9UKL0 485 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 CLEC4EQ9ULY5 219 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 TLR6Q9Y2C9 796 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 COQ4Q9Y3A0 265 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 RAI2Q9Y5P3 530 aa6.51□□□□□ -1.37
CUX1-220ENST00000607092 RP1L1Q8IWN7 2480 aaPredicted RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 A0A1W2PP55 124 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 A0A1W2PR77 199 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 F5H5T6 163 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 O00370 1275 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 KCNK3O14649 394 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 P4HA2O15460 535 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 DXOO77932 396 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 LUC7L3O95232 432 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 MT-CO3P00414 261 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 NUDT7P0C024 238 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ZNF18P17022 549 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 CASP1P29466 404 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ANP32AP39687 249 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 PPP1R2P41236 205 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 PSMD8P48556 350 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ADPRHP54922 357 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 SNX16P57768 344 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 FKBP3Q00688 224 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 IL9RQ01113 521 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 TLE3Q04726 772 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 STIM1Q13586 685 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 CNGA2Q16280 664 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 FAM133BQ5BKY9 247 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 MS4A13Q5J8X5 152 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 PITRM1Q5JRX3 1037 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 C9orf64Q5T6V5 341 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 TCERG1LQ5VWI1 586 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 IGF2-ASQ6U949 168 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 TRIM69Q86WT6 500 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 GATAD2AQ86YP4 633 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 MMAAQ8IVH4 418 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 DHX40Q8IX18 779 aaKnown RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 CARNMT1Q8N4J0 409 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ZNF366Q8N895 744 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ATP6V0D2Q8N8Y2 350 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 TTC13Q8NBP0 860 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 WDR48Q8TAF3 677 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 ERCC4Q92889 916 aaPredicted RBP6.5□□□□□ -1.37
CUX1-220ENST00000607092 TATDN2Q93075 761 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 KLHDC7BQ96G42 594 aa6.5□□□□□ -1.37
CUX1-220ENST00000607092 P2RY11Q96G91 374 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms