RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FAM208BQ5VWN6 2430 aa18.14■□□□□ 0.49
SHKBP1-223ENST00000600552 PTPRBP23467 1997 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3DA0A087WVF3 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3IA0A087WXS9 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3EA0A087X179 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3KA0A087X1G2 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 A0A1W2PPC4 97 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 FAM149AA5PLN7 773 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3FA6NER0 549 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3LB9A6J9 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3HP0C7X1 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 PNMA6AP0CW24 399 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 CCR1P32246 355 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 CTSKP43235 329 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 RNASE9P60153 205 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 RACK1P63244 317 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 EFHC1Q5JVL4 640 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3GQ6DHY5 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3CQ6IPX1 549 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 FBXL22Q6P050 247 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 FAM183BPQ6ZVS7 135 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 SND1Q7KZF4 910 aaKnown RBP eCLIP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 BEND5Q7L4P6 421 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 TBC1D3Q8IZP1 549 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 C1orf131Q8NDD1 294 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 OR2T34Q8NGX1 318 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 MDM1Q8TC05 714 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 PTPRN2Q92932 1015 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 NOX5Q96PH1 765 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 ORAI3Q9BRQ5 295 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 PDCL3Q9H2J4 239 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 EBF2Q9HAK2 575 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 OSGEPQ9NPF4 335 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 KIAA1468Q9P260 1216 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 APEX2Q9UBZ4 518 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 VANGL2Q9ULK5 521 aa18.13■□□□□ 0.49
SHKBP1-223ENST00000600552 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 WNT9AO14904 365 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 ADH1BP00325 375 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 IGLV3-25P01717 112 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 WNT1P04628 370 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 SLC2A3P11169 496 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 ZNF18P17022 549 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 GOT1P17174 413 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 PON1P27169 355 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 MAT2AP31153 395 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 KRT9P35527 623 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 GRK6P43250 576 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 METAP1P53582 386 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 PTK2Q05397 1052 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 ZNF177Q13360 481 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 KCNJ12Q14500 433 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 HSP90AA4PQ58FG1 418 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 C11orf57Q6ZUT1 292 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 KDM1BQ8NB78 822 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 BAHD1Q8TBE0 780 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 SKA1Q96BD8 255 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 SERAC1Q96JX3 654 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 FAM81BQ96LP2 452 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 FTSJ1Q9UET6 329 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 SLC25A13Q9UJS0 675 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 DNAJC12Q9UKB3 198 aa18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 AJAP1Q9UKB5 411 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-223ENST00000600552 TP53BP1Q12888 1972 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 ZZEF1O43149 2961 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 PES1O00541 588 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 VILLO15195 856 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 TNFSF14O43557 240 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 HSF2BPO75031 334 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 ERBB2P04626 1255 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 C5AR1P21730 350 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 CD38P28907 300 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 IRAK1P51617 712 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 AUHQ13825 339 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 MEA1Q16626 185 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 DBX2Q6ZNG2 339 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 C14orf80Q86SX3 495 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 PROSER1Q86XN7 944 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 SLC2A13Q96QE2 648 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 PRMT1Q99873 361 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 TOR4AQ9NXH8 423 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 VPS28Q9UK41 221 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 FZD4Q9ULV1 537 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 SNX10Q9Y5X0 201 aa18.11■□□□□ 0.49
SHKBP1-223ENST00000600552 ITIH6Q6UXX5 1313 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 A0A1B0GVM2 712 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 TCAF2A6NFQ2 919 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 M0QYT0 321 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 CBX4O00257 560 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 FOXN3O00409 490 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 RTN2O75298 545 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 PAGE1O75459 146 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 ITGAVP06756 1048 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 HOXB3P14651 431 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 ADPRHP54922 357 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 PPP2CBP62714 309 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 PPP2CAP67775 309 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 SULT2A1Q06520 285 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 SLC12A1Q13621 1099 aa18.1■□□□□ 0.49
SHKBP1-223ENST00000600552 ARID5BQ14865 1188 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms