RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 IP6K2Q9UHH9 426 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 SALL4Q9UJQ4 1053 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 AP4E1Q9UPM8 1137 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 PCDHA13Q9Y5I0 950 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 CACNA1IQ9P0X4 2223 aa14.61□□□□□ -0.07
SHKBP1-217ENST00000598558 MYO1FO00160 1098 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 HRO43593 1189 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 CREB3O43889 395 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 SNAP91O60641 907 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 MTA2O94776 668 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 PROSCO94903 275 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 RARAP10276 462 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 HOXB2P14652 356 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 RHOQP17081 205 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 POLR2EP19388 210 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 GLDCP23378 1020 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 NHLH1Q02575 133 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ACAP1Q15027 740 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 TCEAL1Q15170 157 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 SMTNL2Q2TAL5 461 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 HSF5Q4G112 596 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 EFHC2Q5JST6 749 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 EOGTQ5NDL2 527 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ACBD5Q5T8D3 534 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 RWDD4Q6NW29 188 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ACRBPQ8NEB7 543 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 CCDC26Q8TAB7 109 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ATOH1Q92858 354 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 TBC1D31Q96DN5 1066 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 RPL10LQ96L21 214 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 BAG1Q99933 345 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 DHX35Q9H5Z1 703 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ZWILCHQ9H900 591 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 DNAI1Q9UI46 699 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 INTUQ9ULD6 942 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 ERVW-1Q9UQF0 538 aa14.6□□□□□ -0.07
SHKBP1-217ENST00000598558 TMEM110-MUSTN1A8MSY1 372 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 TTC34A8MYJ7 566 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 PRPSAP2O60256 369 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 LILRB5O75023 590 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 MT-CO1P00395 513 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 RHOCP08134 193 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 GABRG2P18507 467 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 OR1E1P30953 314 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ACVRL1P37023 503 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 AIF1P55008 147 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 SLC12A1Q13621 1099 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 MESDQ14696 234 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ANO7Q6IWH7 933 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 RASSF3Q86WH2 238 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 CAMKK1Q8N5S9 505 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 FRMD1Q8N878 549 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ZNF557Q8N988 423 aaPredicted RBP14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 NETO2Q8NC67 525 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 MDGA1Q8NFP4 955 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 UCMAQ8WVF2 138 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 TPSD1Q9BZJ3 242 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 LACRTQ9GZZ8 138 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 KLC2Q9H0B6 622 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 TMEM248Q9NWD8 314 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ZSCAN32Q9NX65 697 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 CWC15Q9P013 229 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 INVSQ9Y283 1065 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 HYOU1Q9Y4L1 999 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ACTL7AQ9Y615 435 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 DUSP10Q9Y6W6 482 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 ATG2BQ96BY7 2078 aa14.59□□□□□ -0.07
SHKBP1-217ENST00000598558 TCRBV21S2A2A0A5A6 115 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ILVBLA1L0T0 632 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 GOLGA6L3A6NEY3 463 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 WASH4PA8MWX3 477 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 K7ERQ8 282 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ZMPSTE24O75844 475 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 APBB3O95704 486 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 CD160O95971 181 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ATP5BP06576 529 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 VAV1P15498 845 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 GOT1P17174 413 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 IL4RP24394 825 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 EPHB2P29323 1055 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 CYLC1P35663 651 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ARSEP51690 589 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 DGKEP52429 567 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ECT2LQ008S8 904 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 FNDC3BQ53EP0 1204 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 TRMT11Q7Z4G4 463 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 SETD3Q86TU7 594 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 WDR5BQ86VZ2 330 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 CCDC117Q8IWD4 279 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 TSTD1Q8NFU3 115 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 RFFLQ8WZ73 363 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 HSPH1Q92598 858 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 CD93Q9NPY3 652 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 EBF1Q9UH73 591 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 PLA2G4CQ9UP65 541 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 MFHAS1Q9Y4C4 1052 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 ARIH1Q9Y4X5 557 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 MUC6Q6W4X9 2439 aa14.58□□□□□ -0.08
SHKBP1-217ENST00000598558 DCLK1O15075 740 aa14.57□□□□□ -0.08
SHKBP1-217ENST00000598558 AXIN1O15169 862 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms