RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ACMSDQ8TDX5 336 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 MLPHQ9BV36 600 aaPredicted RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 TRIM55Q9BYV6 548 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SLC17A6Q9P2U8 582 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 PCDHB7Q9Y5E2 793 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 BRCA2P51587 3418 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 NBNO60934 754 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 OR4Q2P0C623 313 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 NQO1P15559 274 aaKnown RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 FRG1Q14331 258 aaKnown RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 ARTNQ5T4W7 220 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 BTBD8Q5XKL5 378 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 NLRP9Q7RTR0 991 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SCD5Q86SK9 330 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 TBC1D1Q86TI0 1168 aaPredicted RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SUGP1Q8IWZ8 645 aaKnown RBP20.15■□□□□ 0.82
CLIP3-206ENST00000593074 PARP9Q8IXQ6 854 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 KLHL29Q96CT2 875 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 TEKT5Q96M29 485 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 AGAP3Q96P47 875 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SLC13A1Q9BZW2 595 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 ZCWPW1Q9H0M4 648 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 LRRC40Q9H9A6 602 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 ARHGEF3Q9NR81 526 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 TXLNGQ9NUQ3 528 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 SIRPGQ9P1W8 387 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 VANGL2Q9ULK5 521 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 MYO16Q9Y6X6 1858 aa20.15■□□□□ 0.82
CLIP3-206ENST00000593074 NFKB1P19838 968 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 PGFP49763 221 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 COG7P83436 770 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 OVGP1Q12889 678 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 TRIM42Q8IWZ5 723 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 FAM126BQ8IXS8 530 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 KLHDC8BQ8IXV7 354 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 RFWD2Q8NHY2 731 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 SH3TC2Q8TF17 1288 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 CERS2Q96G23 380 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 TSGA13Q96PP4 275 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 PSAT1Q9Y617 370 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 RPS6KL1Q9Y6S9 549 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 ALDOAP04075 364 aaKnown RBP20.14■□□□□ 0.81
CLIP3-206ENST00000593074 CCR1P32246 355 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 KCNJ2P63252 427 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 STXBP5Q5T5C0 1151 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 TMEM135Q86UB9 458 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 RASSF3Q86WH2 238 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 SCN4BQ8IWT1 228 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 ARMC2Q8NEN0 867 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 CASP10Q92851 521 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 CELF6Q96J87 481 aaKnown RBP20.14■□□□□ 0.81
CLIP3-206ENST00000593074 TRIM17Q9Y577 477 aa20.14■□□□□ 0.81
CLIP3-206ENST00000593074 SHROOM3Q8TF72 1996 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 PLXNA3P51805 1871 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 ARHGAP42A6NI28 874 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 FGF10O15520 208 aaPredicted RBP20.13■□□□□ 0.81
CLIP3-206ENST00000593074 USP12O75317 370 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 ATP5HO75947 161 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 NEFHP12036 1026 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 PPP2R5DQ14738 602 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 GPNMBQ14956 572 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 RWDD4Q6NW29 188 aaKnown RBP20.13■□□□□ 0.81
CLIP3-206ENST00000593074 ARHGAP12Q8IWW6 846 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 RAB3IL1Q8TBN0 382 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 FUBP3Q96I24 572 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLIP3-206ENST00000593074 FCRL3Q96P31 734 aaPredicted RBP20.13■□□□□ 0.81
CLIP3-206ENST00000593074 MECRQ9BV79 373 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 ABI2Q9NYB9 513 aaPredicted RBP20.13■□□□□ 0.81
CLIP3-206ENST00000593074 BFARQ9NZS9 450 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 ZFATQ9P243 1243 aa20.13■□□□□ 0.81
CLIP3-206ENST00000593074 SYN3O14994 580 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 MSI1O43347 362 aaKnown RBP20.12■□□□□ 0.81
CLIP3-206ENST00000593074 CACNG3O60359 315 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 PAGE1O75459 146 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 USP1O94782 785 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 SRGAP2BP0DMP2 458 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 NFE2Q16621 373 aaPredicted RBP20.12■□□□□ 0.81
CLIP3-206ENST00000593074 STKLD1Q8NE28 680 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 SEPT8Q92599 483 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 SIK2Q9H0K1 926 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 UNC93B1Q9H1C4 597 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 NMUR1Q9HB89 426 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 DCTN4Q9UJW0 460 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 NUP205Q92621 2012 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 BIRC5O15392 142 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 ITGA2BP08514 1039 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 DLDP09622 509 aaKnown RBP20.12■□□□□ 0.81
CLIP3-206ENST00000593074 CCNCP24863 283 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 GP5P40197 560 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 DBN1Q16643 649 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 KYAT3Q6YP21 454 aaKnown RBP20.12■□□□□ 0.81
CLIP3-206ENST00000593074 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.12■□□□□ 0.81
CLIP3-206ENST00000593074 TBC1D31Q96DN5 1066 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 C7orf26Q96N11 449 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 CPNE1Q99829 537 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 KCNK13Q9HB14 408 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 SFMBT1Q9UHJ3 866 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 LRFN2Q9ULH4 789 aa20.12■□□□□ 0.81
CLIP3-206ENST00000593074 ZCWPW2A0A1B0GU75 182 aa20.11■□□□□ 0.81
CLIP3-206ENST00000593074 TPP1O14773 563 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms