RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 GLMNQ92990 594 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 CELF6Q96J87 481 aaKnown RBP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 AVENQ9NQS1 362 aaPredicted RBP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 GDF3Q9NR23 364 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 ANKRD6Q9Y2G4 727 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 ZCCHC18P0CG32 403 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 HALP42357 657 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 MAD2L1Q13257 205 aaPredicted RBP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 MTM1Q13496 603 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 ACOX1Q15067 660 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 BTN2A2Q8WVV5 523 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 INPP4AQ96PE3 977 aaPredicted RBP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 ACO2Q99798 780 aaKnown RBP13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 TCF7L2Q9NQB0 619 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 BLOC1S4Q9NUP1 217 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 THAP1Q9NVV9 213 aa13.57□□□□□ -0.24
SMARCA4-216ENST00000591545 BCL9LQ86UU0 1499 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 CDC25CP30307 473 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 GLUD2P49448 558 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 CDK7P50613 346 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 CACNA2D1P54289 1103 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SMARCB1Q12824 385 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TBX2Q13207 712 aaPredicted RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SLC24A5Q71RS6 500 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SCUBE3Q8IX30 993 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 PPP1R10Q96QC0 940 aaKnown RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 PRKD2Q9BZL6 878 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TNFAIP8O95379 198 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SERPINA4P29622 427 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 GP5P40197 560 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 GRM5P41594 1212 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SARSP49591 514 aaKnown RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 GTF2BQ00403 316 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TUSC3Q13454 348 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 DDX39BQ13838 428 aaKnown RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 HSFY1Q96LI6 401 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 HOXB8P17481 243 aaPredicted RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 ITGB5P18084 799 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 RTP1P59025 263 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TMEM159Q96B96 161 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 FAM192AQ9GZU8 254 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 OSGEPQ9NPF4 335 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 PAPOLBQ9NRJ5 636 aaKnown RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 C1QTNF3-AMACRE9PGA6 284 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 SLURP2P0DP57 97 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 NPR3P17342 541 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TNFRSF8P28908 595 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 ACAP1Q15027 740 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 FUT11Q495W5 492 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 IRGCQ6NXR0 463 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TRMT11Q7Z4G4 463 aaKnown RBP13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 MTERF3Q96E29 417 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 CATSPER2Q96P56 530 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TMEM121Q9BTD3 319 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TTPALQ9BTX7 342 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 KRT84Q9NSB2 600 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 RHBDL2Q9NX52 303 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 TRHDEQ9UKU6 1024 aa13.56□□□□□ -0.24
SMARCA4-216ENST00000591545 VPS4BO75351 444 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 WBP4O75554 376 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 CTSEP14091 401 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 NOS2P35228 1153 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 CAPZA2P47755 286 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 HIRAP54198 1017 aaPredicted RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 C1DQ13901 141 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 PLPP4Q5VZY2 271 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 KIAA1324Q6UXG2 1013 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 NT5DC3Q86UY8 548 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 SLC35C1Q96A29 364 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 CENPTQ96BT3 561 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 AHCYL2Q96HN2 611 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 SEMA4AQ9H3S1 761 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 NRDE2Q9H7Z3 1164 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 ZMYND8Q9ULU4 1186 aaPredicted RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 AP3M1Q9Y2T2 418 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 C15orf38-AP3S2A0A0A6YYH1 394 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 NR5A2O00482 541 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 FSBPO95073 299 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 YBX3P16989 372 aaKnown RBP eCLIP13.55□□□□□ -0.247e-7■□□□□ 11.3
SMARCA4-216ENST00000591545 SOX11P35716 441 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 ARMC12Q5T9G4 340 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 FAM45BPQ6NSW5 357 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 C16orf59Q7L2K0 433 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 OTOAQ7RTW8 1153 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 ARPINQ7Z6K5 226 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 RBM23Q86U06 439 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 ACTL9Q8TC94 416 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 SNRNP27Q8WVK2 155 aaKnown RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 BDH2Q9BUT1 245 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 VPS51Q9UID3 782 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 PCDHA3Q9Y5H8 950 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 A0A0G2JLL6 359 aaPredicted RBP13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 UNCXA6NJT0 531 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 RGS5O15539 181 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 MTA2O94776 668 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 RPN2P04844 631 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 ZNF844Q08AG5 666 aa13.55□□□□□ -0.24
SMARCA4-216ENST00000591545 FAM98BQ52LJ0 330 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms