RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 SYNJ2BP-COX16A0A087WUM0 186 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3DA0A087WVF3 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3IA0A087WXS9 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3EA0A087X179 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3KA0A087X1G2 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 EDDM13A0A1B0GTR0 161 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3FA6NER0 549 aaPredicted RBP12□□□□□ -0.49
LIG3-207ENST00000586119 LRRC72A6NJI9 287 aa12□□□□□ -0.49
LIG3-207ENST00000586119 PPP1R3GB7ZBB8 358 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3LB9A6J9 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 E5RJQ4 531 aa12□□□□□ -0.49
LIG3-207ENST00000586119 GOLGA6L22H0YM25 854 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TLR4O00206 839 aa12□□□□□ -0.49
LIG3-207ENST00000586119 RNF103O00237 685 aa12□□□□□ -0.49
LIG3-207ENST00000586119 PMM2O15305 246 aa12□□□□□ -0.49
LIG3-207ENST00000586119 RTN2O75298 545 aa12□□□□□ -0.49
LIG3-207ENST00000586119 FBXO21O94952 628 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TRUB2O95900 331 aaKnown RBP12□□□□□ -0.49
LIG3-207ENST00000586119 IL1BP01584 269 aa12□□□□□ -0.49
LIG3-207ENST00000586119 PRB1P04280 392 aa12□□□□□ -0.49
LIG3-207ENST00000586119 SRPRAP08240 638 aaKnown RBP12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3HP0C7X1 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 JUPP14923 745 aa12□□□□□ -0.49
LIG3-207ENST00000586119 GOT1P17174 413 aa12□□□□□ -0.49
LIG3-207ENST00000586119 ABCB4P21439 1286 aa12□□□□□ -0.49
LIG3-207ENST00000586119 GGCXP38435 758 aa12□□□□□ -0.49
LIG3-207ENST00000586119 STX17P56962 302 aa12□□□□□ -0.49
LIG3-207ENST00000586119 APBA1Q02410 837 aa12□□□□□ -0.49
LIG3-207ENST00000586119 LRRC63Q05C16 580 aa12□□□□□ -0.49
LIG3-207ENST00000586119 KCNH2Q12809 1159 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TARDBPQ13148 414 aaKnown RBP eCLIP12□□□□□ -0.49
LIG3-207ENST00000586119 EIF4EBP2Q13542 120 aaPredicted RBP12□□□□□ -0.49
LIG3-207ENST00000586119 ARID5BQ14865 1188 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3GQ6DHY5 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3CQ6IPX1 549 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TTI2Q6NXR4 508 aa12□□□□□ -0.49
LIG3-207ENST00000586119 CHSY1Q86X52 802 aa12□□□□□ -0.49
LIG3-207ENST00000586119 TBC1D3Q8IZP1 549 aaPredicted RBP12□□□□□ -0.49
LIG3-207ENST00000586119 PIP4K2CQ8TBX8 421 aa12□□□□□ -0.49
LIG3-207ENST00000586119 FRS2Q8WU20 508 aa12□□□□□ -0.49
LIG3-207ENST00000586119 SERPINB11Q96P15 392 aa12□□□□□ -0.49
LIG3-207ENST00000586119 DDX50Q9BQ39 737 aaKnown RBP12□□□□□ -0.49
LIG3-207ENST00000586119 SLC4A5Q9BY07 1137 aa12□□□□□ -0.49
LIG3-207ENST00000586119 IRX2Q9BZI1 471 aaPredicted RBP12□□□□□ -0.49
LIG3-207ENST00000586119 COX16Q9P0S2 106 aa12□□□□□ -0.49
LIG3-207ENST00000586119 RAI2Q9Y5P3 530 aa12□□□□□ -0.49
LIG3-207ENST00000586119 ITIH6Q6UXX5 1313 aa12□□□□□ -0.49
LIG3-207ENST00000586119 COL5A1P20908 1838 aaPredicted RBP12□□□□□ -0.49
LIG3-207ENST00000586119 A0A087WV48 116 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 CAPN9O14815 690 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 LETM1O95202 739 aaPredicted RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 SMC2O95347 1197 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 IGLV3-25P01717 112 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 KRT5P13647 590 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 C5AR1P21730 350 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 EIF2S3P41091 472 aaKnown RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 ACADVLP49748 655 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 CCR5P51681 352 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 NXPH1P58417 271 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 UBE2HP62256 183 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 SEMG2Q02383 582 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 CENPCQ03188 943 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 STILQ15468 1287 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 SND1Q7KZF4 910 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIG3-207ENST00000586119 KANSL1Q7Z3B3 1105 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 C14orf80Q86SX3 495 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 TMPRSS12Q86WS5 348 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 CCAR2Q8N163 923 aaKnown RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 WDTC1Q8N5D0 677 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 KDM1BQ8NB78 822 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 NELFBQ8WX92 580 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 ZNF606Q8WXB4 792 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 TSC1Q92574 1164 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 KLK6Q92876 244 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 ALG14Q96F25 216 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 DHTKD1Q96HY7 919 aaPredicted RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 CEP63Q96MT8 703 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 PRMT1Q99873 361 aaKnown RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 GTPBP4Q9BZE4 634 aaKnown RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 UBE2TQ9NPD8 197 aaPredicted RBP11.99□□□□□ -0.49
LIG3-207ENST00000586119 FZD4Q9ULV1 537 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 CNTN6Q9UQ52 1028 aa11.99□□□□□ -0.49
LIG3-207ENST00000586119 FAM170AA1A519 330 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 TYW5A2RUC4 315 aaKnown RBP11.98□□□□□ -0.49
LIG3-207ENST00000586119 KCNU1A8MYU2 1149 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 BIN1O00499 593 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 PSMA7O14818 248 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 DFNA5O60443 496 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 SDC3O75056 442 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 RFPL3O75679 317 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 GRAP2O75791 330 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 MOCS3O95396 460 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 MYF5P13349 255 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 EPHA8P29322 1005 aaPredicted RBP11.98□□□□□ -0.49
LIG3-207ENST00000586119 NNTQ13423 1086 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 HES3Q5TGS1 186 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 RNF219Q5W0B1 726 aaPredicted RBP11.98□□□□□ -0.49
LIG3-207ENST00000586119 CXorf57Q6NSI4 855 aaKnown RBP11.98□□□□□ -0.49
LIG3-207ENST00000586119 FBXL22Q6P050 247 aa11.98□□□□□ -0.49
LIG3-207ENST00000586119 FBXL19Q6PCT2 694 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms