RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ARHGAP33O14559 1287 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 CDX4O14627 284 aaPredicted RBP12.74□□□□□ -0.37
SS18-225ENST00000585121 CHRNB2P17787 502 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 MMP8P22894 467 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 FLT3P36888 993 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 CENPCQ03188 943 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 ARL13BQ3SXY8 428 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 C14orf80Q86SX3 495 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 SLC30A5Q8TAD4 765 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 DNASE2BQ8WZ79 361 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 SNX19Q92543 992 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 MYO19Q96H55 970 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 RPL10LQ96L21 214 aaKnown RBP12.74□□□□□ -0.37
SS18-225ENST00000585121 C1orf74Q96LT6 269 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 C11orf70Q9BRQ4 267 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 MUC3BQ9H195 1237 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 CAPN10Q9HC96 672 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 METTL5Q9NRN9 209 aaKnown RBP12.74□□□□□ -0.37
SS18-225ENST00000585121 ADAM22Q9P0K1 906 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 SLCO3A1Q9UIG8 710 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 TMEM59LQ9UK28 342 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 VPS28Q9UK41 221 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 NUP205Q92621 2012 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 LAMA1P25391 3075 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 ITIH6Q6UXX5 1313 aa12.74□□□□□ -0.37
SS18-225ENST00000585121 OPHN1O60890 802 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 KCNK5O95279 499 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 SEMA4FO95754 770 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 CALB1P05937 261 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 RHOCP08134 193 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 C7P10643 843 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ATP1A3P13637 1013 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 FERP16591 822 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 TFE3P19532 575 aaPredicted RBP12.73□□□□□ -0.37
SS18-225ENST00000585121 MAOBP27338 520 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 MZF1P28698 734 aaPredicted RBP12.73□□□□□ -0.37
SS18-225ENST00000585121 SDC4P31431 198 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 GGCXP38435 758 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ZNF165P49910 485 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 TPM4P67936 248 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 KRT83P78385 493 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ATP11AP98196 1134 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 CST6Q15828 149 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 CLEC16AQ2KHT3 1053 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 C5orf22Q49AR2 442 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ACCSLQ4AC99 568 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 C9orf64Q5T6V5 341 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 OTUD1Q5VV17 481 aaPredicted RBP12.73□□□□□ -0.37
SS18-225ENST00000585121 CXorf57Q6NSI4 855 aaKnown RBP12.73□□□□□ -0.37
SS18-225ENST00000585121 USP30Q70CQ3 517 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 DSG4Q86SJ6 1040 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 CFAP57Q96MR6 1250 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 HAPLN3Q96S86 360 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 OMDQ99983 421 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 FEM1AQ9BSK4 669 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 SELENOOQ9BVL4 669 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ZDHHC5Q9C0B5 715 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 PABPC3Q9H361 631 aaKnown RBP12.73□□□□□ -0.37
SS18-225ENST00000585121 MTG2Q9H4K7 406 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 SLC32A1Q9H598 525 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 FBXL12Q9NXK8 326 aa12.73□□□□□ -0.37
SS18-225ENST00000585121 ANKRD62A6NC57 917 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 DRGXA6NNA5 263 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 BCAT2O15382 392 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 SRGAP2O75044 1071 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 ADH1BP00325 375 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 ADRB1P08588 477 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 KRT3P12035 628 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 DESP17661 470 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 ACSL1P33121 698 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 STK19P49842 368 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 VASPP50552 380 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 NOVA1P51513 510 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 C6orf118Q5T5N4 469 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 PSAPL1Q6NUJ1 521 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 APTXQ7Z2E3 356 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 PHLDB2Q86SQ0 1253 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 FAM131BQ86XD5 332 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 MMAAQ8IVH4 418 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 ZCCHC9Q8N567 271 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 EMC1Q8N766 993 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 RXFP2Q8WXD0 754 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 AGPAT1Q99943 283 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 C2orf49Q9BVC5 232 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 HSD3B7Q9H2F3 369 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 RTN4Q9NQC3 1192 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 EIF2B4Q9UI10 523 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 TBC1D30Q9Y2I9 924 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 CKAP5Q14008 2032 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 LRRC72A6NJI9 287 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 E9PAM4 449 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 MID1O15344 667 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 RNASEH2AO75792 299 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 CNTN5O94779 1100 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 ENDOD1O94919 500 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 UNGP13051 313 aaPredicted RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 CSRP1P21291 193 aaKnown RBP12.72□□□□□ -0.37
SS18-225ENST00000585121 SLC8A1P32418 973 aa12.72□□□□□ -0.37
SS18-225ENST00000585121 PSMD8P48556 350 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms