RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TSPAN4O14817 238 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 DHHO43323 396 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SRGAP2O75044 1071 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SASH1O94885 1247 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 CER1O95813 267 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 BAG2O95816 211 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 CHGBP05060 677 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 FSTP19883 344 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 PSMA4P25789 261 aaKnown RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 GCH1P30793 250 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 VIPR2P41587 438 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 MMP14P50281 582 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 PPP5CP53041 499 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 BPIFB3P59826 476 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 EPS8Q12929 822 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SMAD4Q13485 552 aaKnown RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 NR1I3Q14994 352 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 RTP5Q14D33 572 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 CPSF6Q16630 551 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS53-219ENST00000576019 SUPT20HL1Q3ZLR7 823 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 DNAJC21Q5F1R6 531 aaKnown RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 EPHA10Q5JZY3 1008 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 KAZNQ674X7 775 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 GAS2L3Q86XJ1 694 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 OR8H3Q8N146 312 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 WDTC1Q8N5D0 677 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 ANKRD44Q8N8A2 993 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.18□□□□□ -1.42
VPS53-219ENST00000576019 PLA2G15Q8NCC3 412 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SLC35B2Q8TB61 432 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SCAMP4Q969E2 229 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 KIF1BPQ96EK5 621 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 MCRS1Q96EZ8 462 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 CCDC34Q96HJ3 373 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 EYA3Q99504 573 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 MPHOSPH9Q99550 1183 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 SLC46A2Q9BY10 475 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 FAM83DQ9H4H8 585 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 PDE7BQ9NP56 450 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 PCDHB16Q9NRJ7 776 aa6.18□□□□□ -1.42
VPS53-219ENST00000576019 CFAP46Q8IYW2 2715 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 C2orf78A6NCI8 922 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 A8MV72 311 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 CXorf49A8MYA2 514 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 E9PLN8 166 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 FYB1O15117 783 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 SLC7A4O43246 635 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 RGS10O43665 173 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 AGFG2O95081 481 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 PTMAP06454 111 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 XRCC6P12956 609 aaKnown RBP eCLIP6.17□□□□□ -1.428e-6■■□□□ 13.6
VPS53-219ENST00000576019 CHRM3P20309 590 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NFKBIAP25963 317 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NTSR1P30989 418 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 KIR2DL3P43628 341 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 ERVFRD-1P60508 538 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 RAP2BP61225 183 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 CAMK1Q14012 370 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 VGLL4Q14135 290 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 MED22Q15528 200 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 ZIK1Q3SY52 487 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 FAM47AQ5JRC9 791 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 ZNF362Q5T0B9 420 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 LIPMQ5VYY2 423 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NAA35Q5VZE5 725 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 TTC30AQ86WT1 665 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 RAB11FIP4Q86YS3 637 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 ADHFE1Q8IWW8 467 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NAT8LQ8N9F0 302 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 APPL2Q8NEU8 664 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NCSTNQ92542 709 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 GFM2Q969S9 779 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 JAKMIP2Q96AA8 810 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 LIN37Q96GY3 246 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 FAM227BQ96M60 508 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 SLC46A1Q96NT5 459 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 NCAPGQ9BPX3 1015 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 VKORC1Q9BQB6 163 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 TTPALQ9BTX7 342 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 EDEM3Q9BZQ6 932 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 IMPG2Q9BZV3 1241 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 XPO4Q9C0E2 1151 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 KATNBL1Q9H079 304 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 RANBP17Q9H2T7 1088 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 STN1Q9H668 368 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 XAB2Q9HCS7 855 aaKnown RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 ANGPTL2Q9UKU9 493 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 CLCA2Q9UQC9 943 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 LYVE1Q9Y5Y7 322 aa6.17□□□□□ -1.42
VPS53-219ENST00000576019 ZFP37Q9Y6Q3 630 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 RPAP1Q9BWH6 1393 aaPredicted RBP6.17□□□□□ -1.42
VPS53-219ENST00000576019 IGF2RP11717 2491 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 CDHR4A6H8M9 788 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 PDHXO00330 501 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 MSTNO14793 375 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 DCLK1O15075 740 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 ADAM20O43506 726 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 TOX4O94842 621 aa6.16□□□□□ -1.42
VPS53-219ENST00000576019 AFPP02771 609 aaKnown RBP6.16□□□□□ -1.42
VPS53-219ENST00000576019 MPOP05164 745 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms