RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SERBP1Q8NC51 408 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS53-211ENST00000571805 PPP4R1Q8TF05 950 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 ZNF669Q96BR6 464 aaPredicted RBP23.31■■□□□ 1.32
VPS53-211ENST00000571805 VANGL2Q9ULK5 521 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 LRCH1Q9Y2L9 728 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 E2F8A0AVK6 867 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 C9IYK1 514 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 ZBTB24O43167 697 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 CIB2O75838 187 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 FAM200BP0CF97 657 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 CPA3P15088 417 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 MX2P20592 715 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 CD68P34810 354 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 LIMK2P53671 638 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 CRYBB1P53674 252 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 GJA9P57773 515 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 MXRA7P84157 204 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 CCDC153Q494R4 210 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 FSTL4Q6MZW2 842 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 PDZD4Q76G19 769 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 STRA8Q7Z7C7 330 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 NPWQ8N729 165 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 AZIN2Q96A70 460 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 AGAP2Q99490 1192 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 MEI4A8MW99 385 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 HAS3O00219 553 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 USP1O94782 785 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 FBXO21O94952 628 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 CYP2B6P20813 491 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 SPRP35270 261 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 PSEN2P49810 448 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 KLC1Q07866 573 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 ITGA9Q13797 1035 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 ANKRD20A4Q4UJ75 823 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 LENG1Q96BZ8 264 aaPredicted RBP23.3■■□□□ 1.32
VPS53-211ENST00000571805 ZFP42Q96MM3 310 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 SMOQ99835 787 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 FAM96AQ9H5X1 160 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 BFARQ9NZS9 450 aa23.3■■□□□ 1.32
VPS53-211ENST00000571805 ZNF189O75820 626 aaPredicted RBP23.29■■□□□ 1.32
VPS53-211ENST00000571805 LINGO3P0C6S8 592 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 TPI1P60174 286 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 GPRIN1Q7Z2K8 1008 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 MLPHQ9BV36 600 aaPredicted RBP23.29■■□□□ 1.32
VPS53-211ENST00000571805 TMEM30AQ9NV96 361 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 DDX43Q9NXZ2 648 aaKnown RBP23.29■■□□□ 1.32
VPS53-211ENST00000571805 NCAM2O15394 837 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 F7P08709 466 aaPredicted RBP23.29■■□□□ 1.32
VPS53-211ENST00000571805 ANPEPP15144 967 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 SERPINB8P50452 374 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 CDK7P50613 346 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 SLC25A3Q00325 362 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 C6orf163Q5TEZ5 329 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 IRGCQ6NXR0 463 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 KBTBD2Q8IY47 623 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 TNS4Q8IZW8 715 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 ZMIZ2Q8NF64 920 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 PGAP3Q96FM1 320 aaPredicted RBP23.29■■□□□ 1.32
VPS53-211ENST00000571805 KCNK16Q96T55 309 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 CACNG4Q9UBN1 327 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 ANGPTL2Q9UKU9 493 aa23.29■■□□□ 1.32
VPS53-211ENST00000571805 DPPA5A6NC42 116 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 SKIP12755 728 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 MYL4P12829 197 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 RAB41Q5JT25 222 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 VWA5B1Q5TIE3 1220 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 OLFML2BQ68BL8 750 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 CLEC14AQ86T13 490 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 RSPH3Q86UC2 560 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 PPFIBP2Q8ND30 876 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 SHKBP1Q8TBC3 707 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 ATXN7L3BQ96GX2 97 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 CACNA2D1P54289 1103 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 ZBTB17Q13105 803 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 CERCAMQ5T4B2 595 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 C1orf146Q5VVC0 180 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 TLK2Q86UE8 772 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 POU5F2Q8N7G0 328 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 DNAAF3Q8N9W5 541 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 MFSD3Q96ES6 412 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 SENP8Q96LD8 212 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 MCMBPQ9BTE3 642 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 GBA3Q9H227 469 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 GPAMQ9HCL2 828 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 NUP205Q92621 2012 aa23.28■■□□□ 1.32
VPS53-211ENST00000571805 ERI2A8K979 691 aaKnown RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 G3V2L1 256 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 MAP3K7O43318 606 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 HSP90AA5PQ58FG0 334 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 INTS6LQ5JSJ4 861 aaKnown RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 CTU1Q7Z7A3 348 aaKnown RBP23.27■■□□□ 1.32
VPS53-211ENST00000571805 UCMAQ8WVF2 138 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 HDAC11Q96DB2 347 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 SYT15Q9BQS2 421 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 BRD8Q9H0E9 1235 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 CNGB3Q9NQW8 809 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 DNAJB4Q9UDY4 337 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 PCDHB12Q9Y5F1 795 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 MYBPHLA2RUH7 354 aa23.27■■□□□ 1.32
VPS53-211ENST00000571805 AP1G2O75843 785 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms