RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NUMBP49757 651 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 STK19P49842 368 aaPredicted RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 PLK1P53350 603 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 RACK1P63244 317 aaKnown RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 SULT2A1Q06520 285 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 RABGAP1LQ5R372 815 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 OR6B2Q6IFH4 312 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 FBXL22Q6P050 247 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 OLFML1Q6UWY5 402 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 C11orf57Q6ZUT1 292 aaPredicted RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 FAM183BPQ6ZVS7 135 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 ADAT2Q7Z6V5 191 aaKnown RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 SLC47A2Q86VL8 602 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 STK40Q8N2I9 435 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 C1orf131Q8NDD1 294 aaKnown RBP16.58■□□□□ 0.24
CLN3-229ENST00000567963 CDC6Q99741 560 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 EBF2Q9HAK2 575 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 DNAJC12Q9UKB3 198 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 CABIN1Q9Y6J0 2220 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 PLXNA2O75051 1894 aa16.58■□□□□ 0.24
CLN3-229ENST00000567963 LRRC72A6NJI9 287 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 C10orf142B7Z368 130 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 ERBB2P04626 1255 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 CAPNS1P04632 268 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 GOT1P17174 413 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 C5AR1P21730 350 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 CTSKP43235 329 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 OXCT1P55809 520 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 SNX16P57768 344 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 SLC6A3Q01959 620 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 MTA1Q13330 715 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 MAN2A1Q16706 1144 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 TPD52L1Q16890 204 aaPredicted RBP16.57■□□□□ 0.24
CLN3-229ENST00000567963 CXorf57Q6NSI4 855 aaKnown RBP16.57■□□□□ 0.24
CLN3-229ENST00000567963 SND1Q7KZF4 910 aaKnown RBP eCLIP16.57■□□□□ 0.241e-7■■■□□ 15.8
CLN3-229ENST00000567963 AADATQ8N5Z0 425 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 OR2T34Q8NGX1 318 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 TOR4AQ9NXH8 423 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 BTBD3Q9Y2F9 522 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 NYNRINQ9P2P1 1898 aaKnown RBP16.57■□□□□ 0.24
CLN3-229ENST00000567963 PLXNB3Q9ULL4 1909 aa16.57■□□□□ 0.24
CLN3-229ENST00000567963 H0Y8X5 98 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 VILLO15195 856 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 PCDHGA12O60330 932 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 ADH1BP00325 375 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 VAV1P15498 845 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 NOS2P35228 1153 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 PSMD8P48556 350 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 VASPP50552 380 aaPredicted RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 CCT8P50990 548 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 NME3Q13232 169 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 AUHQ13825 339 aaKnown RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 KCNJ12Q14500 433 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 ELAVL3Q14576 367 aaKnown RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 PTPN20Q4JDL3 420 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 CCNI2Q6ZMN8 369 aaPredicted RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 SLC26A9Q7LBE3 791 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 FRS2Q8WU20 508 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 ALG14Q96F25 216 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 RPRD1AQ96P16 312 aaPredicted RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 PPP1R9BQ96SB3 815 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 ACE2Q9BYF1 805 aaPredicted RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 NDST4Q9H3R1 872 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 RALYQ9UKM9 306 aaKnown RBP16.56■□□□□ 0.24
CLN3-229ENST00000567963 PTPRBP23467 1997 aa16.56■□□□□ 0.24
CLN3-229ENST00000567963 M0QYT0 321 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 DFNA5O60443 496 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 DKK1O94907 266 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 IL1BP01584 269 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 ATXN1LP0C7T5 689 aaKnown RBP16.55■□□□□ 0.24
CLN3-229ENST00000567963 PNMA6AP0CW24 399 aaPredicted RBP16.55■□□□□ 0.24
CLN3-229ENST00000567963 CCR5P51681 352 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 ADPRHP54922 357 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 C21orf59P57076 290 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 CENPCQ03188 943 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 VWA3BQ502W6 1294 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 DPY19L2P1Q6NXN4 242 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 FAM114A1Q8IWE2 563 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 FAM71AQ8IYT1 594 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 ZNF397Q8NF99 534 aaPredicted RBP16.55■□□□□ 0.24
CLN3-229ENST00000567963 OR52K2Q8NGK3 314 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 OR14C36Q8NHC7 312 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 SLC6A18Q96N87 628 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 SPAG5Q96R06 1193 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 FEM1AQ9BSK4 669 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 SYNCQ9H7C4 482 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 PLCB1Q9NQ66 1216 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 VANGL2Q9ULK5 521 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 HS3ST4Q9Y661 456 aa16.55■□□□□ 0.24
CLN3-229ENST00000567963 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 TAF4O00268 1085 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 PAGE1O75459 146 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 DAB1O75553 588 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 WNT1P04628 370 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 DRD3P35462 400 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 GRK6P43250 576 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 IRAK1P51617 712 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 BPIFB4P59827 614 aa16.54■□□□□ 0.24
CLN3-229ENST00000567963 ZNF177Q13360 481 aaPredicted RBP16.54■□□□□ 0.24
CLN3-229ENST00000567963 C5orf22Q49AR2 442 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms