RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 BRD3Q15059 726 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 ATPAF2Q8N5M1 289 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 DEPDC1BQ8WUY9 529 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 ANKRD7Q92527 254 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 SNF8Q96H20 258 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 BRD8Q9H0E9 1235 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 NOL6Q9H6R4 1146 aaKnown RBP31.37■■■□□ 2.61
CTCF-203ENST00000566078 ARGLU1Q9NWB6 273 aaPredicted RBP31.37■■■□□ 2.61
CTCF-203ENST00000566078 NFU1Q9UMS0 254 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 DOCK8Q8NF50 2099 aa31.37■■■□□ 2.61
CTCF-203ENST00000566078 E2F8A0AVK6 867 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 H2AFXP16104 143 aaPredicted RBP31.36■■■□□ 2.61
CTCF-203ENST00000566078 OR1E1P30953 314 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 NDST2P52849 883 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 DRG2P55039 364 aaKnown RBP31.36■■■□□ 2.61
CTCF-203ENST00000566078 CDH4P55283 916 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 GPS1Q13098 491 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 HLTFQ14527 1009 aaKnown RBP eCLIP31.36■■■□□ 2.61
CTCF-203ENST00000566078 TTC39BQ5VTQ0 682 aaPredicted RBP31.36■■■□□ 2.61
CTCF-203ENST00000566078 FBXO38Q6PIJ6 1188 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 RIN3Q8TB24 985 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 ZSCAN18Q8TBC5 510 aaPredicted RBP31.36■■■□□ 2.61
CTCF-203ENST00000566078 GRHL1Q9NZI5 618 aa31.36■■■□□ 2.61
CTCF-203ENST00000566078 HOXB8P17481 243 aaPredicted RBP31.35■■■□□ 2.61
CTCF-203ENST00000566078 USP4Q13107 963 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 P3H1Q32P28 736 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 GET4Q7L5D6 327 aaPredicted RBP31.35■■■□□ 2.61
CTCF-203ENST00000566078 ARID3BQ8IVW6 561 aaPredicted RBP31.35■■■□□ 2.61
CTCF-203ENST00000566078 P2RY11Q96G91 374 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 FERMT1Q9BQL6 677 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 RETREG1Q9H6L5 497 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 CLEC1BQ9P126 229 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 CCDC151A5D8V7 595 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 CLDN11O75508 207 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 IVDP26440 423 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 RPL22P35268 128 aaKnown RBP31.35■■■□□ 2.61
CTCF-203ENST00000566078 ADGRE1Q14246 886 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 ZNF77Q15935 545 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 FAM182AQ5T1J6 154 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 ARHGAP36Q6ZRI8 547 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 CHST9Q7L1S5 443 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 NPAS3Q8IXF0 933 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 HJURPQ8NCD3 748 aaPredicted RBP31.35■■■□□ 2.61
CTCF-203ENST00000566078 SEPT10Q9P0V9 454 aa31.35■■■□□ 2.61
CTCF-203ENST00000566078 A0A1B0GVM2 712 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 TYW5A2RUC4 315 aaKnown RBP31.34■■■□□ 2.61
CTCF-203ENST00000566078 TCAF2A6NFQ2 919 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 GFRA2O00451 464 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 TBX10O75333 385 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 ACTN2P35609 894 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 CALCOCO2Q13137 446 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 CPXM2Q8N436 756 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 CLDND1Q9NY35 253 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 WHRNQ9P202 907 aa31.34■■■□□ 2.61
CTCF-203ENST00000566078 SZT2Q5T011 3432 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 RAMP2O60895 175 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 TBL1XO60907 577 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 ERLIN1O75477 346 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 ZNF189O75820 626 aaPredicted RBP31.33■■■□□ 2.61
CTCF-203ENST00000566078 SEC31AO94979 1220 aaKnown RBP31.33■■■□□ 2.61
CTCF-203ENST00000566078 ECHS1P30084 290 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 PAPOLAP51003 745 aaKnown RBP31.33■■■□□ 2.61
CTCF-203ENST00000566078 IZUMO3Q5VZ72 239 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 EP400NLQ6ZTU2 488 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 CCDC13Q8IYE1 715 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 TDRD5Q8NAT2 981 aaKnown RBP31.33■■■□□ 2.61
CTCF-203ENST00000566078 LRRC45Q96CN5 670 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 NEUROG2Q9H2A3 272 aa31.33■■■□□ 2.61
CTCF-203ENST00000566078 KIF26AQ9ULI4 1882 aaPredicted RBP31.32■■■□□ 2.61
CTCF-203ENST00000566078 RASA4BC9J798 803 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 RNF103O00237 685 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 RASA4O43374 803 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 STK10O94804 968 aaKnown RBP31.32■■■□□ 2.6
CTCF-203ENST00000566078 TCF3P15923 654 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 IGFBP4P22692 258 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 CHKAP35790 457 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 CCDC110Q8TBZ0 833 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 FGF13Q92913 245 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 HMCESQ96FZ2 354 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 ADAM7Q9H2U9 754 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 KIF9Q9HAQ2 790 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 PAK5Q9P286 719 aa31.32■■■□□ 2.6
CTCF-203ENST00000566078 ARHGAP42A6NI28 874 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 SOX1O00570 391 aaPredicted RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 POLD3Q15054 466 aaPredicted RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 TAB3Q8N5C8 712 aaPredicted RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 EIF1ADQ8N9N8 165 aaKnown RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 TMA16Q96EY4 203 aaKnown RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 C5orf60A6NFR6 353 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 KCNK1O00180 336 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 DNALI1O14645 258 aaPredicted RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 ITIH2P19823 946 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 WEE1P30291 646 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 CLCN6P51797 869 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 PLTPP55058 493 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 ZNF33AQ06730 810 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 DLX2Q07687 328 aaPredicted RBP31.31■■■□□ 2.6
CTCF-203ENST00000566078 CTC1Q2NKJ3 1217 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 PARP15Q460N3 678 aa31.31■■■□□ 2.6
CTCF-203ENST00000566078 MAP9Q49MG5 647 aa31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms