RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	ANXA2R	Q3ZCQ2	193 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	CBWD5	Q5RIA9	395 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	ATG16L1	Q676U5	607 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	DHRS13	Q6UX07	377 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	BBS12	Q6ZW61	710 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	RFX6	Q8HWS3	928 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	VPS52	Q8N1B4	723 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	PNISR	Q8TF01	805 aa	Known RBP	4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	HTRA1	Q92743	480 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	HVCN1	Q96D96	273 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	NPAS1	Q99742	590 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	GPR63	Q9BZJ6	419 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	WASH6P	Q9NQA3	447 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	ZNF580	Q9UK33	172 aa		4.93	□□□□□ -1.62
CHD9-215	ENST00000565442	SAC3D1	A6NKF1	404 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	PRRT4	C9JH25	899 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	PEX12	O00623	359 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	DSCR3	O14972	297 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ANP32C	O43423	234 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	MOSPD3	O75425	235 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	TFF2	Q03403	129 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ALKBH1	Q13686	389 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	GLE1	Q53GS7	698 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	RUNDC3A	Q59EK9	446 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	MTFR2	Q6P444	385 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	RHPN2	Q8IUC4	686 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ENDOV	Q8N8Q3	282 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	USP38	Q8NB14	1042 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	NAXE	Q8NCW5	288 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	SEMA6D	Q8NFY4	1073 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	PIGK	Q92643	395 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ATP2A3	Q93084	1043 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	PPP1R10	Q96QC0	940 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	FCRL5	Q96RD9	977 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	SEC62	Q99442	399 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	GATA5	Q9BWX5	397 aa	Predicted RBP	4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	TRIM31	Q9BZY9	425 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ACAD9	Q9H845	621 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	THAP1	Q9NVV9	213 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	SLC25A13	Q9UJS0	675 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	ANAPC4	Q9UJX5	808 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	SLC13A4	Q9UKG4	626 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	BTBD3	Q9Y2F9	522 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442	LMTK3	Q96Q04	1460 aa		4.92	□□□□□ -1.62
CHD9-215	ENST00000565442		A6NLC8	198 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	SYN3	O14994	580 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TSPAN3	O60637	253 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	ST6GAL1	P15907	406 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TGM2	P21980	687 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TACR3	P29371	465 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	AVPR2	P30518	371 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	LIFR	P42702	1097 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	YPEL5	P62699	121 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TBX2	Q13207	712 aa	Predicted RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	MTA1	Q13330	715 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	THOC5	Q13769	683 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	INTS11	Q5TA45	600 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	ZNF782	Q6ZMW2	699 aa	Predicted RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TECPR1	Q7Z6L1	1165 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TMEM200A	Q86VY9	491 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TEX19	Q8NA77	164 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	MPP4	Q96JB8	637 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	C5orf34	Q96MH7	638 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	PPM1M	Q96MI6	270 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	ZNF347	Q96SE7	839 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	TM2D2	Q9BX73	214 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	CTDSP1	Q9GZU7	261 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	STN1	Q9H668	368 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	MLXIPL	Q9NP71	852 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	NRIP3	Q9NQ35	241 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	KL	Q9UEF7	1012 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	HSF4	Q9ULV5	492 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	MAFF	Q9ULX9	164 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442	AFG3L2	Q9Y4W6	797 aa		4.91	□□□□□ -1.62
CHD9-215	ENST00000565442		J3KRW8	73 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	DHX16	O60231	1041 aa	Known RBP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	RNF8	O76064	485 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	HNRNPA1	P09651	372 aa	Known RBP eCLIP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	WEE2	P0C1S8	567 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	ATP1A3	P13637	1013 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	AKR1A1	P14550	325 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	PKM	P14618	531 aa	Known RBP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	TKT	P29401	623 aa	Known RBP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	VAMP2	P63027	116 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	GXYLT1	Q4G148	440 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	ARL13A	Q5H913	290 aa	Predicted RBP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	WDR45B	Q5MNZ6	344 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	MORN5	Q5VZ52	161 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	ANO7	Q6IWH7	933 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	DENND1B	Q6P3S1	775 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	RNF144B	Q7Z419	303 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	MDGA2	Q7Z553	956 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	SCN4B	Q8IWT1	228 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	UEVLD	Q8IX04	471 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	EXD3	Q8N9H8	876 aa		4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	OSR1	Q8TAX0	266 aa	Predicted RBP	4.9	□□□□□ -1.63
CHD9-215	ENST00000565442	RRP36	Q96EU6	259 aa	Known RBP	4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms