RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TERB1Q8NA31 727 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 FNIP1Q8TF40 1166 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 CENPIQ92674 756 aaPredicted RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 ARHGEF26Q96DR7 871 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 PRICKLE1Q96MT3 831 aaPredicted RBP17.79■□□□□ 0.44
CLN3-217ENST00000565354 SCNM1Q9BWG6 230 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 PACSIN1Q9BY11 444 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 SLC2A11Q9BYW1 496 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 ANAPC7Q9UJX3 599 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 VANGL2Q9ULK5 521 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 NENFQ9UMX5 172 aa17.79■□□□□ 0.44
CLN3-217ENST00000565354 SRRM3A6NNA2 597 aaPredicted RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 H0Y626 953 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 CDX4O14627 284 aaPredicted RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 TMEM253P0C7T8 217 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 DGKEP52429 567 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 GSDMDP57764 484 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 RPS24P62847 133 aaKnown RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 OGDHQ02218 1023 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 CDH18Q13634 790 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 RAB6CQ53S08 254 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 EFHC2Q5JST6 749 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 PMS2CLQ68D20 193 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 ANKS1BQ7Z6G8 1248 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 SLFN11Q7Z7L1 901 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 C11orf74Q86VG3 221 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 ZNF564Q8TBZ8 553 aaPredicted RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 ANP32BQ92688 251 aaKnown RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 EZH1Q92800 747 aaPredicted RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 HAPLN3Q96S86 360 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 BAG1Q99933 345 aaPredicted RBP17.78■□□□□ 0.44
CLN3-217ENST00000565354 NCAPGQ9BPX3 1015 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 RAB6CQ9H0N0 254 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 INVSQ9Y283 1065 aa17.78■□□□□ 0.44
CLN3-217ENST00000565354 MYO1FO00160 1098 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 GFRA2O00451 464 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 TRIM24O15164 1050 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 ADRA1BP35368 520 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 MAGEA1P43355 309 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 TNFRSF4P43489 277 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 USP39Q53GS9 565 aaKnown RBP17.77■□□□□ 0.44
CLN3-217ENST00000565354 FBXL22Q6P050 247 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 TSTD1Q8NFU3 115 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 UCMAQ8WVF2 138 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 ZCCHC14Q8WYQ9 949 aaKnown RBP17.77■□□□□ 0.44
CLN3-217ENST00000565354 PRMT1Q99873 361 aaKnown RBP17.77■□□□□ 0.44
CLN3-217ENST00000565354 TRIM7Q9C029 511 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 TMPRSS4Q9NRS4 437 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 UVRAGQ9P2Y5 699 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 IP6K2Q9UHH9 426 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 SNX10Q9Y5X0 201 aa17.77■□□□□ 0.44
CLN3-217ENST00000565354 ITPR1Q14643 2758 aa17.77■□□□□ 0.43
CLN3-217ENST00000565354 SOWAHDA6NJG2 315 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 PATE3B3GLJ2 98 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 PRPSAP2O60256 369 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 SRGAP2O75044 1071 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 LUC7L3O95232 432 aaKnown RBP17.76■□□□□ 0.43
CLN3-217ENST00000565354 TIE1P35590 1138 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 SSR1P43307 286 aaKnown RBP17.76■□□□□ 0.43
CLN3-217ENST00000565354 AIF1P55008 147 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 PIGHQ14442 188 aaPredicted RBP17.76■□□□□ 0.43
CLN3-217ENST00000565354 C2orf27AQ580R0 203 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 CYP2U1Q7Z449 544 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 CIR1Q86X95 450 aaPredicted RBP17.76■□□□□ 0.43
CLN3-217ENST00000565354 PHTF2Q8N3S3 785 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 CCDC185Q8N715 623 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 WFIKKN2Q8TEU8 576 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 NTAN1Q96AB6 310 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 MYEOVQ96EZ4 313 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 C1orf74Q96LT6 269 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 ANLNQ9NQW6 1124 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 FBXO10Q9UK96 956 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 CLEC4EQ9ULY5 219 aa17.76■□□□□ 0.43
CLN3-217ENST00000565354 TNRC6BQ9UPQ9 1833 aaKnown RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 A0A1B0GVM2 712 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 TCAF2A6NFQ2 919 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 E9PAM4 449 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 K7EQS6 105 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 MOCS3O95396 460 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 CISD3P0C7P0 127 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 IRX4P78413 519 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 MRPS21P82921 87 aaKnown RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 MESP2Q0VG99 397 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 ZNF177Q13360 481 aaPredicted RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 E2F5Q15329 346 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 TRMT11Q7Z4G4 463 aaKnown RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 C14orf80Q86SX3 495 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 RHOT2Q8IXI1 618 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 CCAR2Q8N163 923 aaKnown RBP17.75■□□□□ 0.43
CLN3-217ENST00000565354 DEFB124Q8NES8 71 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 FIBINQ8TAL6 211 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 IGSF8Q969P0 613 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 P2RY11Q96G91 374 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 BTBD6Q96KE9 485 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 TPSD1Q9BZJ3 242 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 CIPCQ9C0C6 399 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 ABCB8Q9NUT2 735 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 OR12D3Q9UGF7 316 aa17.75■□□□□ 0.43
CLN3-217ENST00000565354 PCSK1NQ9UHG2 260 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms