RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TSPAN18Q96SJ8 248 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 KCNK16Q96T55 309 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 CDRT15Q96T59 188 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 C11orf84Q9BUA3 381 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 APPL1Q9UKG1 709 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 USP3Q9Y6I4 520 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 G3V2L1 256 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 STX16-NPEPL1H3BU86 382 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 NFKBIEO00221 500 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 ATP9BO43861 1147 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 LMO2P25791 158 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 GARSP41250 739 aaKnown RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 IFRD2Q12894 506 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 MAP3K21Q5TCX8 1036 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 ARHGAP22Q7Z5H3 698 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 PQLC1Q8N2U9 271 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 DNAAF3Q8N9W5 541 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 TRPM4Q8TD43 1214 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 EZH1Q92800 747 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 MFSD3Q96ES6 412 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 DNAJC1Q96KC8 554 aaKnown RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 CNBD2Q96M20 576 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 HAPLN3Q96S86 360 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 CCDC28BQ9BUN5 200 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 COMMD3-BMI1R4GMX3 469 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 XRCC1P18887 633 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 TCN1P20061 433 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 GLRBP48167 497 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 LSAMPQ13449 338 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 ITGA7Q13683 1181 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 CNGA3Q16281 694 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 INSCQ1MX18 579 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 EML3Q32P44 896 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 SLC26A9Q7LBE3 791 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 CENPIQ92674 756 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 GATA5Q9BWX5 397 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 NUF2Q9BZD4 464 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 UNKQ9C0B0 810 aaKnown RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 FAM96AQ9H5X1 160 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 COPS7BQ9H9Q2 264 aaPredicted RBP13.5□□□□□ -0.25
CLN3-210ENST00000563874 TK2O00142 265 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 ENO3P13929 434 aaPredicted RBP13.49□□□□□ -0.25
CLN3-210ENST00000563874 PIK3R1P27986 724 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 SULT1E1P49888 294 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 SNAPC2Q13487 334 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 Q3C1V9 767 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 DCAF6Q58WW2 860 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 ZNF618Q5T7W0 954 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 OGFRL1Q5TC84 451 aaPredicted RBP13.49□□□□□ -0.25
CLN3-210ENST00000563874 ARMC3Q5W041 872 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 NXNQ6DKJ4 435 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 DEFB106AQ8N104 65 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 GALNT4Q8N4A0 578 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 MPP4Q96JB8 637 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 RBBP8Q99708 897 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 CPNE1Q99829 537 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 RTKNQ9BST9 563 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 PIM2Q9P1W9 311 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 KLHL8Q9P2G9 620 aaPredicted RBP13.49□□□□□ -0.25
CLN3-210ENST00000563874 CASQ2O14958 399 aaPredicted RBP13.49□□□□□ -0.25
CLN3-210ENST00000563874 FBXO21O94952 628 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 C2P06681 752 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 SMIM18P0DKX4 95 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 TPH1P17752 444 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 RPS12P25398 132 aaKnown RBP13.49□□□□□ -0.25
CLN3-210ENST00000563874 TMEM62Q0P6H9 643 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 NME3Q13232 169 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 VGLL4Q14135 290 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 FLOT2Q14254 428 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 SLC5A9Q2M3M2 681 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 CCDC153Q494R4 210 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 GRTP1Q5TC63 336 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 IYDQ6PHW0 289 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 DSELQ8IZU8 1212 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 FAM156AQ8NDB6 213 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 RNF139Q8WU17 664 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 OPTNQ96CV9 577 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 RCN3Q96D15 328 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 SNTG2Q9NY99 539 aa13.49□□□□□ -0.25
CLN3-210ENST00000563874 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.49□□□□□ -0.25
CLN3-210ENST00000563874 TSPAN1O60635 241 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 DNAJA2O60884 412 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 JUNP05412 331 aaKnown RBP13.48□□□□□ -0.25
CLN3-210ENST00000563874 ZNF286BP0CG31 522 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 SPRP35270 261 aaPredicted RBP13.48□□□□□ -0.25
CLN3-210ENST00000563874 SERPINB8P50452 374 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 LSM12Q3MHD2 195 aaKnown RBP13.48□□□□□ -0.25
CLN3-210ENST00000563874 CERCAMQ5T4B2 595 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 RBM44Q6ZP01 1051 aaKnown RBP13.48□□□□□ -0.25
CLN3-210ENST00000563874 PIP4K2CQ8TBX8 421 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 PPP1R13LQ8WUF5 828 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 LRGUKQ96M69 825 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 CATSPER2Q96P56 530 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 NMRAL1Q9HBL8 299 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 UBP1Q9NZI7 540 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 PSMD13Q9UNM6 376 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 TRIM13O60858 407 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 LIMK2P53671 638 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 XIAPP98170 497 aa13.48□□□□□ -0.25
CLN3-210ENST00000563874 MS4A2Q01362 244 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms