RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 C2orf49Q9BVC5 232 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 SLCO1B3Q9NPD5 702 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 POMPQ9Y244 141 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DNAJA2O60884 412 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 GPIP06744 558 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 NUDT1P36639 197 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 UBAP2LQ14157 1087 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 TGFBIQ15582 683 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 OR2T34Q8NGX1 318 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 OR2T3Q8NH03 318 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SPATA18Q8TC71 538 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 TMEM246Q9BRR3 403 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RANBP3Q9H6Z4 567 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 SHPRHQ149N8 1683 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 GLI2P10070 1586 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CYP2D7A0A087X1C5 515 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 NPHP3-ACAD11A0A0J9YXS1 232 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DCDC2CA8MYV0 355 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 INPP4BO15327 924 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RFPL2O75678 378 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MAGEA2P43356 314 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SLC15A1P46059 708 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 SEPHS1P49903 392 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 FXR2P51116 673 aaKnown RBP eCLIP6.37□□□□□ -1.39
CLK3-212ENST00000563418 FAM102BQ5T8I3 360 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 IFNEQ86WN2 208 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 CCDC185Q8N715 623 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DAGLBQ8NCG7 672 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 Q96MT0 163 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 RBM4BQ9BQ04 359 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 RBM4Q9BWF3 364 aaKnown RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 NEUROG2Q9H2A3 272 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 PCDHB16Q9NRJ7 776 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 KLHL8Q9P2G9 620 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 UBQLN2Q9UHD9 624 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 MTF2Q9Y483 593 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 CYP27B1O15528 508 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 DGCR6Q14129 220 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 IDO2Q6ZQW0 420 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZNF605Q86T29 641 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 OR5T2Q8NGG2 359 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ZSCAN18Q8TBC5 510 aaPredicted RBP6.37□□□□□ -1.39
CLK3-212ENST00000563418 ANKMY1Q9P2S6 941 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 ACSL5Q9ULC5 683 aa6.37□□□□□ -1.39
CLK3-212ENST00000563418 KLF11O14901 512 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 CPNE3O75131 537 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 BNIP3Q12983 259 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 DNAJA4Q8WW22 397 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 HOPXQ9BPY8 73 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 MMP27Q9H306 513 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 FAM105AQ9NUU6 356 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 CBY1Q9Y3M2 126 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 STX11O75558 287 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 KLHL18O94889 574 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 CD40LGP29965 261 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 HTR2BP41595 481 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 GABRB2P47870 512 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 PSMD4P55036 377 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 FBXO43Q4G163 708 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 PYDC2Q56P42 97 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 KAT8Q9H7Z6 458 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 KLHL1Q9NR64 748 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 C12orf71A8MTZ7 269 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 FAM189A1O60320 539 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ICMTO60725 284 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 NDUFS2O75306 463 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ATG7O95352 703 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 FGFR3P22607 806 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 GRIA3P42263 894 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 RGS7P49802 495 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 RAB5BP61020 215 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 WDR72Q3MJ13 1102 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 N4BP2L1Q5TBK1 243 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 ALYREFQ86V81 257 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 TIGD4Q8IY51 512 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 HDAC2Q92769 488 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 PPP1R36Q96LQ0 422 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 SENP6Q9GZR1 1112 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 PCDHB2Q9Y5E7 798 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 H3BMM5 538 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 CCNT2O60583 730 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 TULP3O75386 442 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ITGAVP06756 1048 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 PSKH1P11801 424 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 BST1Q10588 318 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 BST2Q10589 180 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 NFYCQ13952 458 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ARSHQ5FYA8 562 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 AGAP9Q5VTM2 703 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ZNF746Q6NUN9 644 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 ZNF598Q86UK7 904 aaKnown RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 ZNF276Q8N554 614 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 SNX19Q92543 992 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 CLPTM1LQ96KA5 538 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ADAM28Q9UKQ2 775 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 LOC100506127A0A0U1RQW1 187 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 ZNF99A8MXY4 864 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 RGS10O43665 173 aa6.36□□□□□ -1.39
CLK3-212ENST00000563418 RECQL5O94762 991 aaPredicted RBP6.36□□□□□ -1.39
CLK3-212ENST00000563418 HIRAP54198 1017 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms