RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CA14Q9ULX7 337 aa5.45□□□□□ -1.54
VPS35P1-201ENST00000563400 WASF3Q9UPY6 502 aa5.45□□□□□ -1.54
VPS35P1-201ENST00000563400 PIN4Q9Y237 131 aaKnown RBP5.45□□□□□ -1.54
VPS35P1-201ENST00000563400 PTRH2Q9Y3E5 179 aaKnown RBP5.45□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM237BA0A1B0GVD1 139 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SSU72P8A0A1W2PR75 194 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ZSCAN5CA6NGD5 496 aaPredicted RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ZNF263O14978 683 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 PGRMC2O15173 223 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 TAF5LO75529 589 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 RPP40O75818 363 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MPOP05164 745 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 GNAI3P08754 354 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SUPT20HL2P0C7V6 817 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ARP10275 920 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FDPSP14324 419 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FPR1P21462 350 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SAT1P21673 171 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MCM3P25205 808 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ECHS1P30084 290 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 CD6P30203 668 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 AVPR2P30518 371 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SREBF1P36956 1147 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 PSMC4P43686 418 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 NRIP1P48552 1158 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 NT5C2P49902 561 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 PER3P56645 1201 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 GBE1Q04446 702 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 CD69Q07108 199 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 TMEM115Q12893 351 aaPredicted RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 EIF2B5Q13144 721 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ITGA7Q13683 1181 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 BMPR2Q13873 1038 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ACAP1Q15027 740 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 TYSND1Q2T9J0 566 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SUPT20HL1Q3ZLR7 823 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 EMC4Q5J8M3 183 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 LIPMQ5VYY2 423 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 NAA35Q5VZE5 725 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 KRT80Q6KB66 452 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM180AQ6UWF9 173 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 CYP2R1Q6VVX0 501 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 COPS6Q7L5N1 327 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 CHST3Q7LGC8 479 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 UBE3BQ7Z3V4 1068 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 KRT73Q86Y46 540 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 DNAAF5Q86Y56 855 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MIB1Q86YT6 1006 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 TP53INP2Q8IXH6 220 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SYCP3Q8IZU3 236 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SHISA5Q8N114 240 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM71DQ8N9W8 422 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM181AQ8N9Y4 354 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 CNBD1Q8NA66 436 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 HMGB4Q8WW32 186 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM162AQ96A26 154 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 GRAMD1AQ96CP6 724 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MCRS1Q96EZ8 462 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 YTHDC1Q96MU7 727 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 RAB3IPQ96QF0 476 aaPredicted RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 GPR20Q99678 358 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 UTP14AQ9BVJ6 771 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 STRA6Q9BX79 667 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 AMNQ9BXJ7 453 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 INTS2Q9H0H0 1204 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 SLC32A1Q9H598 525 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 TLR8Q9NR97 1041 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MIS18AQ9NYP9 233 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ZC3H7BQ9UGR2 993 aaKnown RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MAGEL2Q9UJ55 1249 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 NIP7Q9Y221 180 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 USP16Q9Y5T5 823 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 ATP8B3O60423 1300 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 MAP3K15Q6ZN16 1313 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 KDM6AO15550 1401 aaPredicted RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 RGPD3A6NKT7 1758 aaPredicted RBP5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 RGPD4Q7Z3J3 1758 aa5.44□□□□□ -1.54
VPS35P1-201ENST00000563400 NHSQ6T4R5 1651 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 MRC1P22897 1456 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CARMIL3Q8ND23 1372 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 GPR75-ASB3A0A0A6YYF3 556 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CTDSP2O14595 271 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CASQ2O14958 399 aaPredicted RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 TLR2O60603 784 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 HNRNPCL1O60812 293 aaKnown RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 PALMO75781 387 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 TOP1P11387 765 aaKnown RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 TMEM11P17152 192 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CCNA2P20248 432 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 HOXC8P31273 242 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 MSX2P35548 267 aaPredicted RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 KIR3DL1P43629 444 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 PIP4K2AP48426 406 aaPredicted RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 NPY4RP50391 375 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 MXI1P50539 228 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 LUMP51884 338 aaPredicted RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CDH8P55286 799 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 YBX1P67809 324 aaKnown RBP5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 CYP4A11Q02928 519 aa5.43□□□□□ -1.54
VPS35P1-201ENST00000563400 NPY5RQ15761 445 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms