RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 OVGP1Q12889 678 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 ILKQ13418 452 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 KCNJ12Q14500 433 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 STAT4Q14765 748 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 ZC3H12AQ5D1E8 599 aaKnown RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 TTC39BQ5VTQ0 682 aaPredicted RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 SYPL2Q5VXT5 272 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RAP1GAP2Q684P5 730 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 LRRC69Q6ZNQ3 347 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 MMS22LQ6ZRQ5 1243 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 CHSY1Q86X52 802 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 ELOA2Q8IYF1 753 aaPredicted RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 APCDD1Q8J025 514 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 STK40Q8N2I9 435 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 EID2Q8N6I1 236 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 MFSD2AQ8NA29 543 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 LMO3Q8TAP4 145 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 ADAM32Q8TC27 787 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 SAP25Q8TEE9 199 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 PTPRN2Q92932 1015 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 KAT5Q92993 513 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 NXPE2Q96DL1 559 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 RPL10LQ96L21 214 aaKnown RBP9.47□□□□□ -0.89
HDDC3-204ENST00000559834 FAM81BQ96LP2 452 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 SPAG5Q96R06 1193 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 SLC4A5Q9BY07 1137 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 THAP9Q9H5L6 903 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 EBF2Q9HAK2 575 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 POPDC2Q9HBU9 364 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 AK5Q9Y6K8 562 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 ZFYVE26Q68DK2 2539 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 APC2O95996 2303 aa9.47□□□□□ -0.89
HDDC3-204ENST00000559834 BAHCC1Q9P281 2608 aa9.46□□□□□ -0.89
HDDC3-204ENST00000559834 A0A1W2PR77 199 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 KCNU1A8MYU2 1149 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 RRP8O43159 456 aaKnown RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 LATO43561 262 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 LETM1O95202 739 aaPredicted RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 FGFR1OPO95684 399 aaKnown RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 TRUB2O95900 331 aaKnown RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ZNF18P17022 549 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 CKMT2P17540 419 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 MZF1P28698 734 aaPredicted RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ABCG1P45844 678 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 VASPP50552 380 aaPredicted RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ADPRHP54922 357 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 SNX16P57768 344 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 NXPH1P58417 271 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 CDK17Q00537 523 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 CCDC15Q0P6D6 951 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 KCNH2Q12809 1159 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 MEA1Q16626 185 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ACCSLQ4AC99 568 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 RABGAP1LQ5R372 815 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ISM2Q6H9L7 571 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 NAPEPLDQ6IQ20 393 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 FOXR2Q6PJQ5 311 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ENOSF1Q7L5Y1 443 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 TMEM110Q86TL2 294 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 TAC4Q86UU9 113 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 IQCHQ86VS3 1027 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 AADATQ8N5Z0 425 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ZNF606Q8WXB4 792 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 OR8D1Q8WZ84 308 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ERCC4Q92889 916 aaPredicted RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 RNF34Q969K3 372 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 MYEOVQ96EZ4 313 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 DCBLD2Q96PD2 775 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 NRSN2Q9GZP1 204 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 XPO7Q9UIA9 1087 aaKnown RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 CNTN6Q9UQ52 1028 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 DMTF1Q9Y222 760 aa9.46□□□□□ -0.9
HDDC3-204ENST00000559834 FARP1Q9Y4F1 1045 aaPredicted RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 FASNP49327 2511 aaKnown RBP9.46□□□□□ -0.9
HDDC3-204ENST00000559834 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 A0A1B0GVM2 712 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 TCAF2A6NFQ2 919 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 C10orf142B7Z368 130 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 C1QTNF3-AMACRE9PGA6 284 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 PLK4O00444 970 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 THAP12O43422 761 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 CALCAP01258 141 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 AFPP02771 609 aaKnown RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 GLI1P08151 1106 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 PDGFRAP16234 1089 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 EPHA8P29322 1005 aaPredicted RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 CCR1P32246 355 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 E2F1Q01094 437 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 BNIP3Q12983 259 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 TARDBPQ13148 414 aaKnown RBP eCLIP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 DNAJC3Q13217 504 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 ZNF177Q13360 481 aaPredicted RBP9.45□□□□□ -0.9
HDDC3-204ENST00000559834 SHBQ15464 509 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 HS1BP3Q53T59 392 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 EFHC1Q5JVL4 640 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 KLHL10Q6JEL2 608 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 TTI2Q6NXR4 508 aa9.45□□□□□ -0.9
HDDC3-204ENST00000559834 DENND1BQ6P3S1 775 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms