RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	GAREM1	Q9H706	876 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	TTC12	Q9H892	705 aa	Predicted RBP	5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	PRDM16	Q9HAZ2	1276 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	GPRC5C	Q9NQ84	441 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	TM7SF3	Q9NS93	570 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	MARCH2	Q9P0N8	246 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	BCCIP	Q9P287	314 aa	Known RBP eCLIP	5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	TIMM13	Q9Y5L4	95 aa	Predicted RBP	5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	FLNC	Q14315	2725 aa		5.07	□□□□□ -1.6
SCFD1-223	ENST00000557076	LRRK2	Q5S007	2527 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	MYO18A	Q92614	2054 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ATXN2	Q99700	1313 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	IGHV1OR15-9	A0A0B4J2B8	117 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	KLF18	A0A0U1RQI7	1052 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076		A0A1B0GTW7	788 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ANTXRL	A6NF34	631 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	C9orf118	A6NHY6	69 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076		K7ERI5	159 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PLK4	O00444	970 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	FLRT2	O43155	660 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	SLC28A2	O43868	658 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	SOAT2	O75908	522 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	KAT7	O95251	611 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	BAG4	O95429	457 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	NFATC1	O95644	943 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	CER1	O95813	267 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	C1S	P09871	688 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	JUP	P14923	745 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	GSPT1	P15170	499 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	IFNAR1	P17181	557 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	CYP11B2	P19099	503 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ADSS	P30520	456 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	LRPAP1	P30533	357 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	HSPA4	P34932	840 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	GRIA2	P42262	883 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	NAMPT	P43490	491 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	IFNAR2	P48551	515 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ITGA1	P56199	1179 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	GRIK2	Q13002	908 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	DMP1	Q13316	513 aa	Predicted RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	SERINC3	Q13530	473 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PPP2R5A	Q15172	486 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ZBTB6	Q15916	424 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ZNF77	Q15935	545 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	HLA-B	Q31612	363 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	SLC10A6	Q3KNW5	377 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	MGAT5B	Q3V5L5	792 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	TTC22	Q5TAA0	569 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	TRMT11	Q7Z4G4	463 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	BLID	Q8IZY5	108 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	FBXL16	Q8N461	479 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	DEPTOR	Q8TB45	409 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	C2orf15	Q8WU43	125 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	MED8	Q96G25	268 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	TMEM176A	Q96HP8	235 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	CYP2S1	Q96SQ9	504 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PNKP	Q96T60	521 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	NAP1L4	Q99733	375 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	ACO2	Q99798	780 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	SEMA4C	Q9C0C4	833 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	LSG1	Q9H089	658 aa	Known RBP	5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	TMEM206	Q9H813	350 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PLEKHA5	Q9HAU0	1116 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	IL21R	Q9HBE5	538 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	VPS54	Q9P1Q0	977 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PCDHA12	Q9UN75	941 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	EFR3B	Q9Y2G0	817 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	PCDHGA1	Q9Y5H4	931 aa		5.06	□□□□□ -1.6
SCFD1-223	ENST00000557076	NID2	Q14112	1375 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	USP9Y	O00507	2555 aa	Predicted RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	TCRBV21S2A2	A0A5A6	115 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	BCAT2	O15382	392 aa	Predicted RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	PCDHGA12	O60330	932 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	USO1	O60763	962 aa	Known RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	NDUFS2	O75306	463 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	KCNH1	O95259	989 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	RECK	O95980	971 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	IGHD	P01880	384 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	APOD	P05090	189 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	EDN1	P05305	212 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	HMGB1	P09429	215 aa	Known RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	CSH1	P0DML2	217 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	CSH2	P0DML3	217 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	MCF2	P10911	925 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	HAPLN1	P10915	354 aa	Predicted RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	GP1BB	P13224	206 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	PLS3	P13797	630 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	GABRG2	P18507	467 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	ATF6	P18850	670 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	CYP3A5	P20815	502 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	NMT1	P30419	496 aa	Known RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	MATK	P42679	507 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	GRK6	P43250	576 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	ZNF143	P52747	638 aa	Predicted RBP	5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	UCN	P55089	124 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	LILRA4	P59901	499 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	CXADR	P78310	365 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	MYO1E	Q12965	1108 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	NPY5R	Q15761	445 aa		5.05	□□□□□ -1.6
SCFD1-223	ENST00000557076	INF2	Q27J81	1249 aa		5.05	□□□□□ -1.6

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