RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TMEM63CQ9P1W3 806 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 CLEC4EQ9ULY5 219 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 PCDHGB2Q9Y5G2 931 aa10.46□□□□□ -0.73
SCFD1-220ENST00000556486 CKAP5Q14008 2032 aa10.46□□□□□ -0.74
SCFD1-220ENST00000556486 COL12A1Q99715 3063 aa10.46□□□□□ -0.74
SCFD1-220ENST00000556486 A0A1B0GVL5 298 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 A0A1W2PQH9 124 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 BRINP1O60477 761 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 GADD45BO75293 160 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 IGLV3-19P01714 112 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 KLKB1P03952 638 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 HMBSP08397 361 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 RPL13P26373 211 aaKnown RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 ADORA2BP29275 332 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 CHKAP35790 457 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 PSMC2P35998 433 aaKnown RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 GCLMP48507 274 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 RNF144AP50876 292 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 COG7P83436 770 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 LY6DQ14210 128 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 ZNF234Q14588 700 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 EIF4HQ15056 248 aaKnown RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 E2F5Q15329 346 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 EDRF1Q3B7T1 1238 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 FOXD4L6Q3SYB3 417 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 RAB41Q5JT25 222 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 C10orf120Q5SQS8 335 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 HES3Q5TGS1 186 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 FYB2Q5VWT5 728 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 ZNF787Q6DD87 383 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 FOXD4L3Q6VB84 417 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 GPR155Q7Z3F1 870 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 ADAT2Q7Z6V5 191 aaKnown RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 FMNL3Q8IVF7 1028 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 HSCBQ8IWL3 235 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 GALNT12Q8IXK2 581 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 FAM217AQ8IXS0 508 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 CPXM2Q8N436 756 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 RBBP8NLQ8NC74 664 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 NUP58Q9BVL2 599 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 DCLK3Q9C098 648 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 CIPCQ9C0C6 399 aa10.45□□□□□ -0.74
SCFD1-220ENST00000556486 THAP10Q9P2Z0 257 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-220ENST00000556486 A0A1W2PQ27 194 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 A0A1W2PQ64 194 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 ENC1O14682 589 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 ARHGAP6O43182 974 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 HSP90AA1P07900 732 aaKnown RBP10.44□□□□□ -0.74
SCFD1-220ENST00000556486 TRIM49P0CI25 452 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 TRIM49CP0CI26 452 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 RALAP11233 206 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 KRT13P13646 458 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 TIMP2P16035 220 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 OXTRP30559 389 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 HNF1BP35680 557 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 SYKP43405 635 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 MFAP3P55082 362 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 TLE3Q04726 772 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 ARHGAP17Q68EM7 881 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 KRT39Q6A163 491 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 PM20D1Q6GTS8 502 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 BTLAQ7Z6A9 289 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 TMPRSS12Q86WS5 348 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 FAM186BQ8IYM0 893 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 ARHGAP18Q8N392 663 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 FAM181AQ8N9Y4 354 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 CCDC150Q8NCX0 1101 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 CCDC47Q96A33 483 aaKnown RBP10.44□□□□□ -0.74
SCFD1-220ENST00000556486 BIRC7Q96CA5 298 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 PIWIL1Q96J94 861 aaKnown RBP10.44□□□□□ -0.74
SCFD1-220ENST00000556486 CNDP2Q96KP4 475 aaKnown RBP10.44□□□□□ -0.74
SCFD1-220ENST00000556486 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.44□□□□□ -0.74
SCFD1-220ENST00000556486 SLC2A11Q9BYW1 496 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 CPNE5Q9HCH3 593 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 NEUROD4Q9HD90 331 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 NAGPAQ9UK23 515 aa10.44□□□□□ -0.74
SCFD1-220ENST00000556486 FAM47DPA6NHR8 397 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 RFPL3O75679 317 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 CTSKP43235 329 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 NDUFA8P51970 172 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 RAD23BP54727 409 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 ZNF445P59923 1031 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 KRT85P78386 507 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 ADAM9Q13443 819 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 ARHGAP40Q5TG30 622 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 TMEM215Q68D42 235 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 SERPINA13PQ6UXR4 307 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 SPACA3Q8IXA5 215 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 EID2Q8N6I1 236 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 ANKRD52Q8NB46 1076 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 SLC4A11Q8NBS3 891 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 FBXL13Q8NEE6 735 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 CYB5D2Q8WUJ1 264 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 HPS1Q92902 700 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 IGSF8Q969P0 613 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 TMEM176AQ96HP8 235 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 PCED1AQ9H1Q7 454 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 LHX5Q9H2C1 402 aa10.43□□□□□ -0.74
SCFD1-220ENST00000556486 SUV39H2Q9H5I1 410 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms