RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CD52P31358 61 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 CSE1LP55060 971 aaKnown RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 TPD52P55327 224 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 STX1BP61266 288 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 MRPS5P82675 430 aaKnown RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 KLC3Q6P597 504 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 PACS1Q6VY07 963 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 ZNF410Q86VK4 478 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 APLFQ8IW19 511 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 TDRD5Q8NAT2 981 aaKnown RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 GABPB2Q8TAK5 448 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 ZSCAN18Q8TBC5 510 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 UTP6Q9NYH9 597 aaKnown RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 PGAP2Q9UHJ9 254 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 LAMB2P55268 1798 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 BEST1O76090 585 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 L1CAMP32004 1257 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 ABL2P42684 1182 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 TUBP50607 506 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 SH3BGRP55822 239 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 SLC10A2Q12908 348 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 TMED1Q13445 227 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 OVOS1Q6IE37 1185 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 TMPRSS6Q8IU80 811 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 CCNJLQ8IV13 435 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 ZNF567Q8N184 647 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 PPHLN1Q8NEY8 458 aaKnown RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 C10orf82Q8WW14 230 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 HIC2Q96JB3 615 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 MAML3Q96JK9 1138 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 KLHL5Q96PQ7 755 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 ADAM2Q99965 735 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 ILKAPQ9H0C8 392 aaPredicted RBP15.17■□□□□ 0.02
CUX1-215ENST00000556210 TRPV6Q9H1D0 765 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 PIF1Q9H611 641 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 TAS2R1Q9NYW7 299 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 TMEM216Q9P0N5 145 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 WASF2Q9Y6W5 498 aa15.17■□□□□ 0.02
CUX1-215ENST00000556210 NRCAMQ92823 1304 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 YWHAHQ04917 246 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 CNGA3Q16281 694 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 ACSBG2Q5FVE4 666 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 ASRGL1Q7L266 308 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 FRMD8Q9BZ67 464 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 PRKAG3Q9UGI9 489 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 DCDC2Q9UHG0 476 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 AURKCQ9UQB9 309 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 TTC24A2A3L6 582 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 SEC24DO94855 1032 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 HNRNPLP14866 589 aaKnown RBP eCLIP15.16■□□□□ 0.026e-8■■■■■ 28.9
CUX1-215ENST00000556210 PAMP19021 973 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 GRIK3Q13003 919 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 ZNF235Q14590 738 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 CDCA2Q69YH5 1023 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 NAPEPLDQ6IQ20 393 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 DRICH1Q6PGQ1 229 aaPredicted RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 OLFML1Q6UWY5 402 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 SLC41A1Q8IVJ1 513 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 B4GALNT2Q8NHY0 566 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 SCAMP5Q8TAC9 235 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 KCTD4Q8WVF5 259 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 NMD3Q96D46 503 aaKnown RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 CDK5RAP2Q96SN8 1893 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 ITM2AO43736 263 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 OAS1P00973 400 aaKnown RBP15.16■□□□□ 0.02
CUX1-215ENST00000556210 GSTT1P30711 240 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 SH3D19Q5HYK7 790 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 SPDYAQ5MJ70 313 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 LCA5Q86VQ0 697 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 NUP93Q8N1F7 819 aa15.16■□□□□ 0.02
CUX1-215ENST00000556210 PIGNO95427 931 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 ETS2P15036 469 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 ADRA1BP35368 520 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 DDR2Q16832 855 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 PLEKHG4Q58EX7 1191 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 CHSY1Q86X52 802 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 BCO2Q9BYV7 579 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 SNX15Q9NRS6 342 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 PIGVQ9NUD9 493 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 IPO11Q9UI26 975 aaKnown RBP15.15■□□□□ 0.02
CUX1-215ENST00000556210 C9IYK1 514 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 PGAM1P18669 254 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 NR2C2P49116 596 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 GJA9P57773 515 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 RALGPS1Q5JS13 557 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 IQSEC1Q6DN90 963 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 LRRC8EQ6NSJ5 796 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 CGB2Q6NT52 195 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 SLC38A7Q9NVC3 462 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 ZNF212Q9UDV6 495 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 ADAMTS5Q9UNA0 930 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 LRRC42Q9Y546 428 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 PCDHA11Q9Y5I1 949 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 PABPN1LA6NDY0 278 aaKnown RBP15.15■□□□□ 0.02
CUX1-215ENST00000556210 NT5C1B-RDH14C9J2C7 533 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 TRDMT1O14717 391 aaKnown RBP15.15■□□□□ 0.02
CUX1-215ENST00000556210 NRP1O14786 923 aa15.15■□□□□ 0.02
CUX1-215ENST00000556210 TKTP29401 623 aaKnown RBP15.15■□□□□ 0.02
CUX1-215ENST00000556210 CLDN10P78369 228 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms