RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 H0YGN5 161 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 MSI1O43347 362 aaKnown RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 PPM1AP35813 382 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 KCNJ4P48050 445 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 HILS1P60008 231 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 SF3A3Q12874 501 aaKnown RBP eCLIP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 KEAP1Q14145 624 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 KIAA1755Q5JYT7 1200 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 C10orf76Q5T2E6 689 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 KRTAP5-4Q6L8H1 288 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 ADGRF3Q8IZF5 1079 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 PAQR4Q8N4S7 273 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 TMEM174Q8WUU8 243 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 ZNF419Q96HQ0 510 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 TMEM41AQ96HV5 264 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 CLMNQ96JQ2 1002 aa4.25□□□□□ -1.73
SCFD1-216ENST00000555550 ADAD1Q96M93 576 aaKnown RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 WDR83Q9BRX9 315 aaKnown RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 RBM38Q9H0Z9 239 aaKnown RBP4.25□□□□□ -1.73
SCFD1-216ENST00000555550 CXorf65A6NEN9 183 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 KRTAP9-6A8MVA2 160 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 TNFRSF13BO14836 293 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-216ENST00000555550 ATG13O75143 517 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 PAPSS2O95340 614 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-216ENST00000555550 WNT1P04628 370 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 MLH1P40692 756 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 RRP1P56182 461 aaKnown RBP4.24□□□□□ -1.73
SCFD1-216ENST00000555550 RBM6P78332 1123 aaKnown RBP4.24□□□□□ -1.73
SCFD1-216ENST00000555550 PMPCAQ10713 525 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 BTBD16Q32M84 506 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 ARL13AQ5H913 290 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-216ENST00000555550 TTC39AQ5SRH9 613 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 PDXDC1Q6P996 788 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 LMO3Q8TAP4 145 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 STYXQ8WUJ0 223 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 BRD8Q9H0E9 1235 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 TASP1Q9H6P5 420 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 ZBTB1Q9Y2K1 713 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 LRCH1Q9Y2L9 728 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 CKAP5Q14008 2032 aa4.24□□□□□ -1.73
SCFD1-216ENST00000555550 FOXO6A8MYZ6 492 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 FFAR2O15552 330 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 TNFRSF6BO95407 300 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 LARGE1O95461 756 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 ACAA1P09110 424 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 FAM3BP58499 235 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 RPL36AP83881 106 aaKnown RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 SPARCL1Q14515 664 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 ALG10Q5BKT4 473 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 ALG10BQ5I7T1 473 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 ATPAF1Q5TC12 328 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 XRRA1Q6P2D8 792 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 FOXP4Q8IVH2 680 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 ZNF527Q8NB42 609 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 TMEM255BQ8WV15 326 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 KAT2AQ92830 837 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 WBP1Q96G27 269 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 DOCK7Q96N67 2140 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 MECRQ9BV79 373 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 SORBS1Q9BX66 1292 aaKnown RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 TP63Q9H3D4 680 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 PLSCR4Q9NRQ2 329 aa4.23□□□□□ -1.73
SCFD1-216ENST00000555550 LIN7CQ9NUP9 197 aaKnown RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 COPG1Q9Y678 874 aaKnown RBP4.23□□□□□ -1.73
SCFD1-216ENST00000555550 RPS10-NUDT3A0A1W2PQS6 291 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 GOLGA6L3A6NEY3 463 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 CYP3A4P08684 503 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 IGFBP2P18065 325 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 CHRNA5P30532 468 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 ENTPD1P49961 510 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 FOXL2P58012 376 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 RPS6KA2Q15349 733 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 MAP9Q49MG5 647 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 ERAP2Q6P179 960 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 PGBD2Q6P3X8 592 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 TRILQ7L0X0 811 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 RBM23Q86U06 439 aaKnown RBP4.22□□□□□ -1.73
SCFD1-216ENST00000555550 KLBQ86Z14 1044 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 FAM71BQ8TC56 605 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 CLEC4CQ8WTT0 213 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 IP6K1Q92551 441 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 SF3B5Q9BWJ5 86 aaKnown RBP4.22□□□□□ -1.73
SCFD1-216ENST00000555550 OBP2BQ9NPH6 170 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 FBXO4Q9UKT5 387 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 CNTN6Q9UQ52 1028 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 SCN5AQ14524 2016 aa4.22□□□□□ -1.73
SCFD1-216ENST00000555550 CYP3A7-CYP3A51PA0A087WV96 503 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 AGAP5A6NIR3 686 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 SLC38A8A6NNN8 435 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 LGALS16A8MUM7 142 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 EFCAB8A8MWE9 144 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 MCIDASD6RGH6 385 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 SKAP2O75563 359 aaPredicted RBP4.21□□□□□ -1.74
SCFD1-216ENST00000555550 GYS1P13807 737 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 CYP3A7P24462 503 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 STAT1P42224 750 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 RCAN1P53805 252 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 ENTPD8Q5MY95 495 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 TTLL5Q6EMB2 1281 aa4.21□□□□□ -1.74
SCFD1-216ENST00000555550 NADSYN1Q6IA69 706 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms