RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ASTLQ6HA08 431 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 FSTL4Q6MZW2 842 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 RWDD4Q6NW29 188 aaKnown RBP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 BMP8AQ7Z5Y6 402 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 CCDC105Q8IYK2 499 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 AHI1Q8N157 1196 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 MMGT1Q8N4V1 131 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 UBL4BQ8N7F7 174 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 UCMAQ8WVF2 138 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 TEKT4Q8WW24 435 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 SNRNP25Q9BV90 132 aaKnown RBP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 EPC1Q9H2F5 836 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 DHX35Q9H5Z1 703 aaKnown RBP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 RETREG1Q9H6L5 497 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 ZWILCHQ9H900 591 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 ANLNQ9NQW6 1124 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 TMPRSS4Q9NRS4 437 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 PPARGC1AQ9UBK2 798 aaKnown RBP11.22□□□□□ -0.61
SHMT2-218ENST00000555213 GGA2Q9UJY4 613 aa11.22□□□□□ -0.61
SHMT2-218ENST00000555213 F5P12259 2224 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 IGLV3-10A0A075B6K4 115 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CTAGE15A4D2H0 777 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 FAM86C2PA6NEL3 165 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 EFCAB8A8MWE9 144 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 H3BRJ5 948 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 I6L893 689 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 DAPK3O43293 454 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CREB3O43889 395 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 GPR37L1O60883 481 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 LRIG2O94898 1065 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 PDGFBP01127 241 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 EGFP01133 1207 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CTAGE8P0CG41 777 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RARAP10276 462 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 PABPC1P11940 636 aaKnown RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RHOQP17081 205 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 EPHB2P29323 1055 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 ARL4AP40617 200 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 TNFRSF4P43489 277 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RPS9P46781 194 aaKnown RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SLC6A11P48066 632 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SLC12A1Q13621 1099 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CCINQ13939 588 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 KRT81Q14533 505 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 DMC1Q14565 340 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SMTNL2Q2TAL5 461 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 C5orf22Q49AR2 442 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 ODF2Q5BJF6 829 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 PPP6R3Q5H9R7 873 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 ARTNQ5T4W7 220 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RNF43Q68DV7 783 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 NAIF1Q69YI7 327 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 TRMT11Q7Z4G4 463 aaKnown RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 POLNQ7Z5Q5 900 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 C14orf80Q86SX3 495 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SETD3Q86TU7 594 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CTAGE6Q86UF2 777 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CIR1Q86X95 450 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SLC13A5Q86YT5 568 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CTAGE4Q8IX94 777 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RCOR2Q8IZ40 523 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 EXD1Q8NHP7 514 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 FIBINQ8TAL6 211 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 FAM71BQ8TC56 605 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 KCNV2Q8TDN2 545 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 HSPH1Q92598 858 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 IGSF8Q969P0 613 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 ACDQ96AP0 544 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 CATSPERBQ9H7T0 1116 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 RBM12Q9NTZ6 932 aaKnown RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 ABCB8Q9NUT2 735 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 KIAA1522Q9P206 1035 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 SNX10Q9Y5X0 201 aa11.21□□□□□ -0.61
SHMT2-218ENST00000555213 V9GYY5 206 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-218ENST00000555213 TECTAO75443 2155 aa11.21□□□□□ -0.62
SHMT2-218ENST00000555213 SHISA7A6NL88 538 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 DRGXA6NNA5 263 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 BHMG1C9JSJ3 638 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 EEF2KO00418 725 aaKnown RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 NPC1O15118 1278 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 TIMM44O43615 452 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ATG13O75143 517 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ZRANB2O95218 330 aaKnown RBP eCLIP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 FGGP02679 453 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ATP5BP06576 529 aaKnown RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 RHOCP08134 193 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 CD48P09326 243 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 CHRNB1P11230 501 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 KDELR1P24390 212 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 HLA-FP30511 346 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 OR1E1P30953 314 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ETFBP38117 255 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MAPKAPK2P49137 400 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 C2orf54Q08AI8 447 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 KLF1Q13351 362 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 LLGL1Q15334 1064 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms