RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PPM1NQ8N819 430 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF473Q8WTR7 871 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 DPF3Q92784 378 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF689Q96CS4 500 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 NOL6Q9H6R4 1146 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 SYBUQ9NX95 663 aa13.06□□□□□ -0.32
VIPAS39-206ENST00000553888 GMNCA6NCL1 334 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 RTN3O95197 1032 aaPredicted RBP13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 PARNO95453 639 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 MSH2P43246 934 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 LBX1P52954 281 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 TDRPQ86YL5 185 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 SPATA22Q8NHS9 363 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 SPATA17Q96L03 361 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 EBNA1BP2Q99848 306 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 DHRS4Q9BTZ2 278 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 RC3H2Q9HBD1 1191 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 TIMP1P01033 207 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 RAG1P15918 1043 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 HOXC13P31276 330 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 ADGRD1Q6QNK2 874 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF683Q8IZ20 524 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 MZB1Q8WU39 189 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 CYP4F11Q9HBI6 524 aa13.05□□□□□ -0.32
VIPAS39-206ENST00000553888 C5orf42Q9H799 3197 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CCDC78A2IDD5 438 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 MAFKO60675 156 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CSH1P0DML2 217 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CSH2P0DML3 217 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 TPH1P17752 444 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 MX2P20592 715 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ATP5DP30049 168 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 PAPOLAP51003 745 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 SATB1Q01826 763 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 TEX44Q53QW1 395 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 NADSYN1Q6IA69 706 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 C4orf22Q6V702 233 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 MICALCLQ6ZW33 695 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC39A11Q8N1S5 342 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ATPAF2Q8N5M1 289 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ARNTL2Q8WYA1 636 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 TMEM169Q96HH4 297 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 OXNAD1Q96HP4 312 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CYTH2Q99418 400 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 PAIP2Q9BPZ3 127 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 IGSF9Q9P2J2 1179 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC24A2Q9UI40 661 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 MIA3Q5JRA6 1907 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ARHGAP42A6NI28 874 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 TRDMT1O14717 391 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 MT-CYBP00156 380 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 SOD2P04179 222 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ATP2A2P16615 1042 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 KRT4P19013 534 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CA8P35219 290 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 RPA3P35244 121 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 BMPR2Q13873 1038 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 KLHL38Q2WGJ6 581 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 FBXL22Q6P050 247 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 RFWD3Q6PCD5 774 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CFAP52Q8N1V2 620 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ARHGAP18Q8N392 663 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 RIBC1Q8N443 379 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 RTL3Q8N8U3 475 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF512Q96ME7 567 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF558Q96NG5 402 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 CLIC5Q9NZA1 410 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 GRID1Q9ULK0 1009 aa13.04□□□□□ -0.32
VIPAS39-206ENST00000553888 TTC24A2A3L6 582 aaPredicted RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 NCAM2O15394 837 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 APOEP02649 317 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 HSPA8P11142 646 aaKnown RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 WDR4P57081 412 aaKnown RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 RPL10AP62906 217 aaKnown RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 PLD1Q13393 1074 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 TRIP4Q15650 581 aaPredicted RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 LRRC8BQ6P9F7 803 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 KDELC2Q7Z4H8 507 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 LRRC34Q8IZ02 419 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 DYDC1Q8WWB3 177 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 ARMC5Q96C12 935 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 STAMBPL1Q96FJ0 436 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 SERAC1Q96JX3 654 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 FERMT1Q9BQL6 677 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 GBA3Q9H227 469 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 CATSPERBQ9H7T0 1116 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 XAB2Q9HCS7 855 aaKnown RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 PLXNA4Q9HCM2 1894 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 ALPK3Q96L96 1907 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 ABHD14A-ACY1A0A1B0GW23 586 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 ZDHHC11BP0C7U3 371 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 CCNB1P14635 433 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 HMGA1P17096 107 aaKnown RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 C16orf59Q7L2K0 433 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC44A1Q8WWI5 657 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 WBP2Q969T9 261 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 HMCESQ96FZ2 354 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 TEKT5Q96M29 485 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 ZNF317Q96PQ6 595 aaPredicted RBP13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 GKN1Q9NS71 199 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms