RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PDE1BQ01064 536 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 STX3Q13277 289 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 KCNA10Q16322 511 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 CERCAMQ5T4B2 595 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 DCLRE1AQ6PJP8 1040 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 TMEM135Q86UB9 458 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 DNAAF3Q8N9W5 541 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 RNF34Q969K3 372 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 NSL1Q96IY1 281 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 NMUR2Q9GZQ4 415 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 EBF2Q9HAK2 575 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 BFARQ9NZS9 450 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 TRHDEQ9UKU6 1024 aa18.96■□□□□ 0.63
PRPF40B-208ENST00000548436 ZCWPW2A0A1B0GU75 182 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 FAM155AB1AL88 458 aaPredicted RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 MTSS1O43312 755 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 PLIN3O60664 434 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 IGLV3-25P01717 112 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 F7P08709 466 aaPredicted RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 GP5P40197 560 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 ZNF135P52742 658 aaPredicted RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 RPL10AP62906 217 aaKnown RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 GRIK3Q13003 919 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 TUSC3Q13454 348 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 EIF4EBP2Q13542 120 aaPredicted RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 MBLAC2Q68D91 279 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 OVOS1Q6IE37 1185 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 CCDC91Q7Z6B0 441 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 CRLF3Q8IUI8 442 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 SCML4Q8N228 414 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 TEKT5Q96M29 485 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 CPNE1Q99829 537 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 APOL2Q9BQE5 337 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 MAGED2Q9UNF1 606 aaPredicted RBP18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 NEU3Q9UQ49 428 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 MYO16Q9Y6X6 1858 aa18.95■□□□□ 0.62
PRPF40B-208ENST00000548436 JCHAINP01591 159 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 SRGAP2BP0DMP2 458 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 FGF3P11487 239 aaPredicted RBP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 GM2AP17900 193 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 PGFP49763 221 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 CACNB2Q08289 660 aaPredicted RBP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 KRT72Q14CN4 511 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 GRTP1Q5TC63 336 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 MFSD3Q96ES6 412 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ZIC5Q96T25 663 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 AGAP2Q99490 1192 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 TUBB6Q9BUF5 446 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 CADM1Q9BY67 442 aaKnown RBP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 THAP1Q9NVV9 213 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 UBP1Q9NZI7 540 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ARMCX1Q9P291 453 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 TXNDC16Q9P2K2 825 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 DCDC2Q9UHG0 476 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 HBS1LQ9Y450 684 aaKnown RBP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ARHGAP42A6NI28 874 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ERI2A8K979 691 aaKnown RBP18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ITM2AO43736 263 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ATP9BO43861 1147 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 CCDC22O60826 627 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 USP1O94782 785 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ANP32DO95626 131 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 KCNA4P22459 653 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 PCLAFQ15004 111 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ANKRD20A4Q4UJ75 823 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 ITPRIPL1Q6GPH6 555 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 AZIN2Q96A70 460 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 BTBD10Q9BSF8 475 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 SIK2Q9H0K1 926 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 OSBPL2Q9H1P3 480 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 DSEQ9UL01 958 aa18.94■□□□□ 0.62
PRPF40B-208ENST00000548436 RPLP2P05387 115 aaKnown RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 TYK2P29597 1187 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CCND3P30281 292 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 AQP5P55064 265 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 FCGRTP55899 365 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 RWDD4Q6NW29 188 aaKnown RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ARHGAP36Q6ZRI8 547 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CMC1Q7Z7K0 106 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 DCLK2Q8N568 766 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CNTD1Q8N815 330 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ATP2A3Q93084 1043 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ATXN7L3BQ96GX2 97 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 VAT1Q99536 393 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 RBBP8Q99708 897 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ARHGEF38Q9NXL2 777 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 TMEM216Q9P0N5 145 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 NYNRINQ9P2P1 1898 aaKnown RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 E2F8A0AVK6 867 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 LYPLA1O75608 230 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 PROCP04070 461 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 TPH1P17752 444 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CALB2P22676 271 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 DBN1Q16643 649 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 TEDDM1Q5T9Z0 273 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 FAM91A1Q658Y4 838 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CCSAPQ6IQ19 270 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 RINLQ6ZS11 566 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms